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L3_072_000M1_scaffold_5298

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_5298_1
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..139
DNA (138bp) protein (46aa)
50S ribosomal protein L29 n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GRW1_9FIRM
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
rpmC; 50S ribosomal protein L29
L3_072_000M1_scaffold_5298_2
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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141..404
DNA (264bp) protein (88aa)
30S ribosomal protein S17 n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D6U7_9FIRM
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
rpsQ; 30S ribosomal protein S17
L3_072_000M1_scaffold_5298_3
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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420..788
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HMP3_9FIRM
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
rplN; 50S ribosomal protein L14
L3_072_000M1_scaffold_5298_4
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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804..1541
DNA (738bp) protein (246aa)
50S ribosomal protein L5 n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D1D8_9FIRM
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
rplE; 50S ribosomal protein L5
L3_072_000M1_scaffold_5298_5

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1558..1743
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=3 Tax=root RepID=R5CXF0_9FIRM
Ribosomal protein S14 {ECO:0000313|EMBL:EKC55875.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
rpsZ; 30S ribosomal protein S14 type Z
L3_072_000M1_scaffold_5298_6
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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2032..2430
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DAY4_9FIRM
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
rpsH; 30S ribosomal protein S8
L3_072_000M1_scaffold_5298_7
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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2446..2991
DNA (546bp) protein (182aa)
50S ribosomal protein L6 n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DTS7_9FIRM
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
rplF; 50S ribosomal protein L6
L3_072_000M1_scaffold_5298_8
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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3006..3365
DNA (360bp) protein (120aa)
50S ribosomal protein L18 n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6CXT9_9FIRM
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
rplR; 50S ribosomal protein L18
L3_072_000M1_scaffold_5298_9
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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3383..3883
DNA (501bp) protein (167aa)
30S ribosomal protein S5 n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D8J7_9FIRM
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
rpsE; 30S ribosomal protein S5
L3_072_000M1_scaffold_5298_10
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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3896..4075
DNA (180bp) protein (60aa)
50S ribosomal protein L30 n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D0P2_9FIRM
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
rpmD; 50S ribosomal protein L30
L3_072_000M1_scaffold_5298_11
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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4090..4530
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DAY9_9FIRM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
rplO; 50S ribosomal protein L15
L3_072_000M1_scaffold_5298_12
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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4531..5814
DNA (1284bp) protein (428aa)
Protein translocase subunit SecY n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DTT2_9FIRM
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
secY; preprotein translocase SecY subunit
L3_072_000M1_scaffold_5298_13
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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5830..6468
DNA (639bp) protein (213aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|SAAS:SAAS00079673}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|SAAS:SAAS00079673};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6CXU4_9FIRM
L3_072_000M1_scaffold_5298_14
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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6465..7226
DNA (762bp) protein (254aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
map; methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D8K1_9FIRM
L3_072_000M1_scaffold_5298_15
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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7228..7509
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D0P7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA81355.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
hypothetical protein
L3_072_000M1_scaffold_5298_16
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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7513..7731
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=3 Tax=Firmicutes RepID=R5D6T4_9FIRM
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
infA; translation initiation factor IF-1
L3_072_000M1_scaffold_5298_17
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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7745..7858
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=4 Tax=Firmicutes RepID=G4KVX3_OSCVS
rpmJ; 50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_072_000M1_scaffold_5298_18
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists


7884..8252
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6CXV0_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
rpsM; 30S ribosomal protein S13
L3_072_000M1_scaffold_5298_19
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists


8271..8669
DNA (399bp) protein (133aa)
30S ribosomal protein S11 n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D8K8_9FIRM
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
rpsK; 30S ribosomal protein S11
L3_072_000M1_scaffold_5298_20
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists


8694..9296
DNA (603bp) protein (201aa)
30S ribosomal protein S4 n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D0Q1_9FIRM
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
rpsD; 30S ribosomal protein S4
L3_072_000M1_scaffold_5298_21
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9380..9514
DNA (135bp) protein (45aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
rpoA; DNA-directed RNA polymerase alpha subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GYY3_9FIRM
L3_072_000M1_scaffold_5298_22
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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9481..10254
DNA (774bp) protein (258aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
rpoA; DNA-directed RNA polymerase alpha subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DB00_9FIRM
L3_072_000M1_scaffold_5298_23
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists


10301..10645
DNA (345bp) protein (115aa)
50S ribosomal protein L17 n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DTU0_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
rplQ; 50S ribosomal protein L17
Displaying 23 items

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