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L3_072_000M1_scaffold_2357

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_2357_1
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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309..803
DNA (495bp) protein (165aa)
Protein MraZ n=1 Tax=Clostridium sp. CAG:1024 RepID=R5ALW8_9CLOT
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
mraZ; mraZ family protein
L3_072_000M1_scaffold_2357_2
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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745..1602
DNA (858bp) protein (286aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5Y7_9CLOT
mraW; S-adenosyl-methyltransferase MraW
L3_072_000M1_scaffold_2357_3
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1629..2069
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BHT1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50981.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_072_000M1_scaffold_2357_4
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2086..4236
DNA (2151bp) protein (717aa)
stage V sporulation protein D (EC:2.4.1.129)
Peptidoglycan glycosyltransferase n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDR7_9CLOT
Peptidoglycan glycosyltransferase {ECO:0000313|EMBL:CCX50982.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_072_000M1_scaffold_2357_5
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4264..5697
DNA (1434bp) protein (478aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B6U2_9CLOT
L3_072_000M1_scaffold_2357_6
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5721..6737
DNA (1017bp) protein (339aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B9N3_9CLOT
L3_072_000M1_scaffold_2357_7
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7047..8414
DNA (1368bp) protein (456aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5Z4_9CLOT
L3_072_000M1_scaffold_2357_8
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8447..9571
DNA (1125bp) protein (375aa)
Stage V sporulation protein E n=1 Tax=Clostridium sp. CAG:226 RepID=R5BHT7_9CLOT
Stage V sporulation protein E {ECO:0000313|EMBL:CCX50986.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
ftsW; cell division protein FtsW
L3_072_000M1_scaffold_2357_9
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9639..10904
DNA (1266bp) protein (422aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDS4_9CLOT
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
L3_072_000M1_scaffold_2357_10
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10891..11910
DNA (1020bp) protein (340aa)
POTRA domain FtsQ-type superfamily n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDH1_9CLOT
POTRA domain FtsQ-type superfamily {ECO:0000313|EMBL:CCX49461.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
POTRA domain, FtsQ-type superfamily
L3_072_000M1_scaffold_2357_11
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12046..13251
DNA (1206bp) protein (402aa)
Cell division protein ftsA n=1 Tax=Clostridium sp. CAG:226 RepID=R5B1N7_9CLOT
Cell division protein ftsA {ECO:0000313|EMBL:CCX49460.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
FtsA2; heat shock protein 70
L3_072_000M1_scaffold_2357_12
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13271..14536
DNA (1266bp) protein (422aa)
Cell division protein FtsZ n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5I1_9CLOT
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
ftsZ; cell division protein FtsZ
L3_072_000M1_scaffold_2357_13
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

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14619..15665
DNA (1047bp) protein (349aa)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
asnA2; aspartate--ammonia ligase AsnA (EC:6.3.1.1)
Aspartate--ammonia ligase n=2 Tax=Firmicutes RepID=R6PZR7_9FIRM
L3_072_000M1_scaffold_2357_14
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15816..16580
DNA (765bp) protein (255aa)
Sporulation factor SpoIIGA n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDG6_9CLOT
Sporulation factor SpoIIGA {ECO:0000313|EMBL:CCX49456.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_072_000M1_scaffold_2357_15
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16573..17274
DNA (702bp) protein (234aa)
RNA polymerase sigma factor n=1 Tax=Clostridium sp. CAG:226 RepID=R5B1N1_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
sigE; sporulation sigma factor SigE
L3_072_000M1_scaffold_2357_16
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17373..17696)
DNA (324bp) protein (108aa)
Transcriptional regulator Fur family n=1 Tax=Eubacterium sp. CAG:115 RepID=R5LM38_9FIRM
Transcriptional regulator Fur family {ECO:0000313|EMBL:CCY74052.1}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
Fur family ferric uptake regulator
L3_072_000M1_scaffold_2357_17
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17941..18219)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B1M6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX49450.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_072_000M1_scaffold_2357_18
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18566..19135)
DNA (570bp) protein (190aa)
UPF0340 protein BN545_00901 n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDG0_9CLOT
UPF0340 protein BN545_00901 {ECO:0000256|HAMAP-Rule:MF_00800}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_072_000M1_scaffold_2357_19
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19342..21888
DNA (2547bp) protein (849aa)
Ferrous iron transport protein B n=1 Tax=Clostridium sp. CAG:226 RepID=R5B7L6_9CLOT
Ferrous iron transport protein B {ECO:0000313|EMBL:CCX50249.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
ferrous iron transporter B
L3_072_000M1_scaffold_2357_20
unknown

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21904..22071
DNA (168bp) protein (56aa)

This feature has no annotations

L3_072_000M1_scaffold_2357_21
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22242..22772
DNA (531bp) protein (177aa)
Ribosomal subunit interface protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B4M5_9CLOT
Ribosomal subunit interface protein {ECO:0000313|EMBL:CCX50248.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
30S ribosomal protein S30
L3_072_000M1_scaffold_2357_22
Clostridium sp. ASF356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22855..23637
DNA (783bp) protein (261aa)
xynC2; acetyl esterase XynC (EC:3.1.-.-)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZD73_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ11755.1}; TaxID=97138 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF356.;"
L3_072_000M1_scaffold_2357_23
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23813..24451
DNA (639bp) protein (213aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B614_9CLOT
L3_072_000M1_scaffold_2357_24
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24452..27898
DNA (3447bp) protein (1149aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Transcription-repair-coupling factor n=1 Tax=Clostridium sp. CAG:226 RepID=R5BCZ6_9CLOT
transcription-repair coupling factor
L3_072_000M1_scaffold_2357_25
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27975..29234
DNA (1260bp) protein (420aa)
prsA; peptidyl-prolyl isomerase (EC:5.2.1.8)
PPIC-type PPIASE domain n=1 Tax=Clostridium sp. CAG:226 RepID=R5BGY5_9CLOT
PPIC-type PPIASE domain {ECO:0000313|EMBL:CCX50726.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_072_000M1_scaffold_2357_26
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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29336..29593
DNA (258bp) protein (86aa)
S4 domain protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B237_9CLOT
S4 domain protein {ECO:0000313|EMBL:CCX49620.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
RNA-binding S4 domain protein
L3_072_000M1_scaffold_2357_27
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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29590..30693
DNA (1104bp) protein (368aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:2.7.7.60 4.6.1.12)
2-C-methyl-D-erythritol 2 4-cyclodiphosphate synthase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B606_9CLOT
Bifunctional enzyme IspD/IspF {ECO:0000256|SAAS:SAAS00096235}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_072_000M1_scaffold_2357_28
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30764..31036)
DNA (273bp) protein (91aa)
DNA-binding protein HU-alpha (Histone-like protein) n=1 Tax=Clostridium sp. CAG:226 RepID=R5B8Y0_9CLOT
DNA-binding protein HU-alpha (Histone-like protein) {ECO:0000313|EMBL:CCX50709.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
histone family protein DNA-binding protein
L3_072_000M1_scaffold_2357_29
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31161..32603)
DNA (1443bp) protein (481aa)
MazG family protein n=1 Tax=Clostridium sp. CAG:138 RepID=R6AVU5_9CLOT
MazG family protein {ECO:0000313|EMBL:CDA50706.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
MazG family protein
L3_072_000M1_scaffold_2357_30
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32619..34217)
DNA (1599bp) protein (533aa)
Polysaccharide biosynthesis protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BGX0_9CLOT
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:CCX50711.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Polysaccharide biosynthesis protein
Displaying items 1-30 of 35 in total

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