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L3_072_000M1_scaffold_1268

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1268_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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470..2251
DNA (1782bp) protein (594aa)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067}; Short=Adenase {ECO:0000256|HAMAP-Rule:MF_01518};; Short=Adenine aminase {ECO:0000256|HAMAP-Rule:MF_01518};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
ade1; adenine deaminase Ade (EC:3.5.4.2)
Adenine deaminase 1 n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5B8_9FIRM
L3_072_000M1_scaffold_1268_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2332..4077
DNA (1746bp) protein (582aa)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067}; Short=Adenase {ECO:0000256|HAMAP-Rule:MF_01518};; Short=Adenine aminase {ECO:0000256|HAMAP-Rule:MF_01518};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
adenine deaminase (EC:3.5.4.2)
Adenine deaminase n=2 Tax=Ruminococcus lactaris RepID=B5CL71_9FIRM
L3_072_000M1_scaffold_1268_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4096..5613
DNA (1518bp) protein (506aa)
ABC transporter, ATP-binding protein n=2 Tax=Ruminococcus lactaris RepID=B5CL70_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22590.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
ABC transporter
L3_072_000M1_scaffold_1268_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5603..6133
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C779_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22591.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
inner-membrane translocator
L3_072_000M1_scaffold_1268_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6112..6660
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C779_9FIRM
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EDY34015.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
ABC transporter permease
L3_072_000M1_scaffold_1268_6
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6657..7586
DNA (930bp) protein (310aa)
Branched-chain amino acid ABC transporter, permease protein n=2 Tax=Ruminococcus lactaris RepID=B5CL68_9FIRM
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EDY34014.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
inner-membrane translocator
L3_072_000M1_scaffold_1268_7
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7645..8781
DNA (1137bp) protein (379aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5C1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22593.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
med; transcriptional activator protein Med
L3_072_000M1_scaffold_1268_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9717..10466
DNA (750bp) protein (250aa)
CRISPR-associated protein Cas6 n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L090_9FIRM
CRISPR-associated protein Cas6
CRISPR-associated protein Cas6 {ECO:0000313|EMBL:CBL13030.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_072_000M1_scaffold_1268_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10463..12775
DNA (2313bp) protein (771aa)
CRISPR-associated protein, Csm1 family n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L091_9FIRM
CRISPR-associated protein, Csm1 family
CRISPR-associated protein, Csm1 family {ECO:0000313|EMBL:CBL13031.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_072_000M1_scaffold_1268_10
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

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12775..13173
DNA (399bp) protein (133aa)
CRISPR-associated protein Csm2 family n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BLC9_9FIRM
CRISPR-associated protein Csm2 family {ECO:0000313|EMBL:CDD66312.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
CRISPR-associated protein, Csm2 family
L3_072_000M1_scaffold_1268_11
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13210..13866
DNA (657bp) protein (219aa)
CRISPR-associated RAMP protein Csm3 family n=1 Tax=Clostridium sp. CAG:277 RepID=R7K0U0_9CLOT
CRISPR-associated RAMP protein Csm3 family {ECO:0000313|EMBL:CDE69453.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
CRISPR-associated protein, Csm3 family
L3_072_000M1_scaffold_1268_12
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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13879..14796
DNA (918bp) protein (306aa)
CRISPR type III-a/mtube-associated ramp protein csm4 n=1 Tax=Dorea sp. 5-2 RepID=R9NED3_9FIRM
CRISPR type III-a/mtube-associated ramp protein csm4 {ECO:0000313|EMBL:EOS81503.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
CRISPR-associated RAMP protein, Csm4 family
L3_072_000M1_scaffold_1268_13
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14793..15926
DNA (1134bp) protein (378aa)
CRISPR type III-a/mtube-associated ramp protein csm5 n=1 Tax=Dorea sp. 5-2 RepID=R9NDV9_9FIRM
CRISPR type III-a/mtube-associated ramp protein csm5 {ECO:0000313|EMBL:EOS81504.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
hypothetical protein
L3_072_000M1_scaffold_1268_14
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18204..19211
DNA (1008bp) protein (336aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Clostridium sp. CAG:277 RepID=R7JZL4_9CLOT
CRISPR-associated protein Cas1
L3_072_000M1_scaffold_1268_15
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19216..19530
DNA (315bp) protein (105aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Dorea sp. 5-2 RepID=R9NE35_9FIRM
CRISPR-associated protein Cas2
L3_072_000M1_scaffold_1268_16
Centipeda periodontii, Centipeda, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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19559..20941
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Centipeda periodontii DSM 2778 RepID=F5RJ25_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGK62256.1}; TaxID=888060 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Centipeda.;" source="Centipeda periodontii DSM 2778.;"
CRISPR-associated protein Csm6
L3_072_000M1_scaffold_1268_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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20984..21253
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5F3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22594.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_072_000M1_scaffold_1268_18
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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21330..22181
DNA (852bp) protein (284aa)
Transcriptional regulator, MerR family n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CL62_9FIRM
Transcriptional regulator, MerR family {ECO:0000313|EMBL:EDY34008.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_072_000M1_scaffold_1268_19
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22372..23397
DNA (1026bp) protein (342aa)
Dihydrodipicolinate reductase domain protein {ECO:0000313|EMBL:EDY34006.1}; EC=1.17.1.8 {ECO:0000313|EMBL:EDY34006.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Dihydrodipicolinate reductase domain protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CL60_9FIRM
dihydrodipicolinate reductase
L3_072_000M1_scaffold_1268_20
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24024..28049
DNA (4026bp) protein (1342aa)
CRISPR-associated endonuclease Cas9 {ECO:0000256|HAMAP-Rule:MF_01480}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01480};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
CRISPR-associated protein, Csn1 family n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CL59_9FIRM
CRISPR-associated endonuclease, Csn1 family
L3_072_000M1_scaffold_1268_21
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28046..28918
DNA (873bp) protein (291aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CL58_9FIRM
CRISPR-associated protein, Cas1 family
L3_072_000M1_scaffold_1268_22
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28884..29228
DNA (345bp) protein (115aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CL57_9FIRM
CRISPR-associated Cas2
L3_072_000M1_scaffold_1268_23
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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29225..29893
DNA (669bp) protein (223aa)
CRISPR-associated protein, Csn2 family n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CL56_9FIRM
CRISPR-associated protein, Csn2 family {ECO:0000313|EMBL:EDY34002.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
CRISPR-associated protein, Csn2 family
L3_072_000M1_scaffold_1268_24
unknown

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comp(29940..30395)
DNA (456bp) protein (152aa)

This feature has no annotations

L3_072_000M1_scaffold_1268_25
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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30896..31138
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CL51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY33997.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L3_072_000M1_scaffold_1268_26
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31291..31584
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CL54_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY34000.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L3_072_000M1_scaffold_1268_27
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31816..31986
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CL51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY33997.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L3_072_000M1_scaffold_1268_28
unknown

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32296..32637
DNA (342bp) protein (114aa)

This feature has no annotations

L3_072_000M1_scaffold_1268_29
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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32588..32869
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CL50_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY33996.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L3_072_000M1_scaffold_1268_30
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32930..33088
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CL49_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY33995.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Displaying items 1-30 of 52 in total

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