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L3_072_000M1_scaffold_272

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_272_1
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..1151)
DNA (1149bp) protein (383aa)
Glycosyl transferase family 39 n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDU3_9CLOT
Glycosyl transferase family 39 {ECO:0000313|EMBL:CCX49581.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_072_000M1_scaffold_272_2
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1225..1584)
DNA (360bp) protein (120aa)
UPF0102 protein BN545_01020 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B209_9CLOT
UPF0102 protein BN545_01020 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_072_000M1_scaffold_272_3
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1589..2218)
DNA (630bp) protein (210aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5X1_9CLOT
L3_072_000M1_scaffold_272_4
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2202..3068)
DNA (867bp) protein (289aa)
Ribosome biogenesis GTPase A n=1 Tax=Clostridium sp. CAG:226 RepID=R5B2U2_9CLOT
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
ribosome biogenesis GTP-binding protein YlqF
L3_072_000M1_scaffold_272_5
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3183..3536)
DNA (354bp) protein (118aa)
50S ribosomal protein L19 n=1 Tax=Clostridium sp. CAG:138 RepID=R6AM76_9CLOT
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
rplS; 50S ribosomal protein L19
L3_072_000M1_scaffold_272_6
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3646..4380)
DNA (735bp) protein (245aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
tRNA (Guanine37-N1) methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDU1_9CLOT
L3_072_000M1_scaffold_272_7
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4370..4885)
DNA (516bp) protein (172aa)
Ribosome maturation factor RimM n=1 Tax=Clostridium sp. CAG:226 RepID=R5B206_9CLOT
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
16S rRNA-processing protein RimM
L3_072_000M1_scaffold_272_8
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4956..5183)
DNA (228bp) protein (76aa)
UPF0109 protein BN545_01014 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5W8_9CLOT
UPF0109 protein BN545_01014 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein UPF0109
L3_072_000M1_scaffold_272_9
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5210..5452)
DNA (243bp) protein (81aa)
30S ribosomal protein S16 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B2U0_9CLOT
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
rpsP; ribosomal protein S16
L3_072_000M1_scaffold_272_10
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5514..6848)
DNA (1335bp) protein (445aa)
Signal recognition particle protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B9N9_9CLOT
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
signal recognition particle protein
L3_072_000M1_scaffold_272_11
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6838..7164)
DNA (327bp) protein (109aa)
UPF0122 protein BN545_01011 n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDT9_9CLOT
UPF0122 protein BN545_01011 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_072_000M1_scaffold_272_12
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

comp(7254..8009)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5ED61_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX90338.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
hypothetical protein
L3_072_000M1_scaffold_272_13
unknown

Not on your lists

comp(8106..9461)
DNA (1356bp) protein (452aa)

This feature has no annotations

L3_072_000M1_scaffold_272_14
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9451..9948)
DNA (498bp) protein (166aa)
rpoD2; RNA polymerase factor sigma-70 RpoD (EC:2.7.7.6)
RNA polymerase factor sigma-70 RpoD {ECO:0000313|EMBL:AGC68713.1}; EC=2.7.7.6 {ECO:0000313|EMBL:AGC68713.1};; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
RNA polymerase factor sigma-70 RpoD n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VT55_CLOSH
L3_072_000M1_scaffold_272_15
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10075..10971)
DNA (897bp) protein (299aa)
Signal recognition particle receptor FtsY n=1 Tax=Clostridium sp. CAG:138 RepID=R6ARA3_9CLOT
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
signal recognition particle-docking protein FtsY
L3_072_000M1_scaffold_272_16
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10995..14558)
DNA (3564bp) protein (1188aa)
Chromosome partition protein Smc n=1 Tax=Clostridium sp. CAG:226 RepID=R5B2T6_9CLOT
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
smc; chromosome segregation protein Smc
L3_072_000M1_scaffold_272_17
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14594..15304)
DNA (711bp) protein (237aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B9N4_9CLOT
L3_072_000M1_scaffold_272_18
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15368..15589)
DNA (222bp) protein (74aa)
Acyl carrier protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BDT6_9CLOT
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
acyl carrier protein
L3_072_000M1_scaffold_272_19
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15667..16674)
DNA (1008bp) protein (336aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
Phosphate acyltransferase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B200_9CLOT
fatty acid/phospholipid synthesis protein PlsX
L3_072_000M1_scaffold_272_20
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16783..16965)
DNA (183bp) protein (61aa)
50S ribosomal protein L32 n=1 Tax=Clostridium sp. CAG:138 RepID=R6AGZ1_9CLOT
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
50S ribosomal protein L32
L3_072_000M1_scaffold_272_21
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16968..17477)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B2T3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX49563.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_072_000M1_scaffold_272_22
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17540..18736)
DNA (1197bp) protein (399aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
Acetate kinase n=1 Tax=Clostridium sp. CAG:1024 RepID=R5ATF2_9CLOT
ack; acetate kinase
L3_072_000M1_scaffold_272_23
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18760..19758)
DNA (999bp) protein (333aa)
eutD; phosphotransacetylase (EC:2.3.1.8)
Phosphotransacetylase n=1 Tax=Clostridium sp. CAG:1024 RepID=R5ANV7_9CLOT
Phosphotransacetylase {ECO:0000313|EMBL:CCX42462.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
L3_072_000M1_scaffold_272_24
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19921..21126
DNA (1206bp) protein (402aa)
UPF0348 protein BN545_01000 n=1 Tax=Clostridium sp. CAG:226 RepID=R5B1Z8_9CLOT
UPF0348 protein BN545_01000 {ECO:0000256|HAMAP-Rule:MF_01539}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L3_072_000M1_scaffold_272_25
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21173..22180
DNA (1008bp) protein (336aa)
Sporulation integral membrane protein YlbJ n=1 Tax=Clostridium sp. CAG:226 RepID=R5B5V4_9CLOT
Sporulation integral membrane protein YlbJ {ECO:0000313|EMBL:CCX49559.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_072_000M1_scaffold_272_26
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22191..23108)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5B9M6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX49557.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
NtpF; vacuolar-type H+-ATPase subunit H
L3_072_000M1_scaffold_272_27
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23105..23593)
DNA (489bp) protein (163aa)
Phosphopantetheine adenylyltransferase n=1 Tax=Clostridium sp. CAG:964 RepID=R6UCQ2_9CLOT
phosphopantetheine adenylyltransferase
Tax=BJP_IG2157_Clostridiales_52_13
L3_072_000M1_scaffold_272_28
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23593..24150)
DNA (558bp) protein (186aa)
RNA methyltransferase RsmD family n=1 Tax=Clostridium sp. CAG:226 RepID=R5B1Z5_9CLOT
RNA methyltransferase RsmD family {ECO:0000313|EMBL:CCX49555.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
DNA methyltransferase
L3_072_000M1_scaffold_272_29
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24223..24789)
DNA (567bp) protein (189aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
5,10-methenyltetrahydrofolate synthetase (EC:6.3.3.2)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:138 RepID=R6AJT1_9CLOT
L3_072_000M1_scaffold_272_30
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24792..25160)
DNA (369bp) protein (123aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237180};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
Holo-[acyl-carrier-protein] synthase n=1 Tax=Clostridium pasteurianum BC1 RepID=R4K5F7_CLOPA
holo-(acyl-carrier-protein) synthase
Displaying items 1-30 of 67 in total

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