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L3_072_000M1_scaffold_1072

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_1072_1
GWD2_Clostridiales_32_19_curated, Clostridiales, Bacteria

Not on your lists

1..1488
DNA (1488bp) protein (496aa)
Calcium-translocating P-type ATPase, PMCA-type id=1873365 bin=GWD2_Clostridiales_32_19 species=Syntrophobotulus glycolicus genus=Syntrophobotulus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Clostridiales_32_19 organism_group=Firmicute organism_desc=a85
MgtA4; cation transport ATPase
Tax=GWD2_Clostridiales_32_19_curated
L3_072_000M1_scaffold_1072_2
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1527..3269)
DNA (1743bp) protein (581aa)
lipid A export ATP-binding/permease protein MsbA (EC:3.6.3.-)
ABC transporter n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ESI9_9FIRM
ABC transporter {ECO:0000313|EMBL:CDE05899.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
L3_072_000M1_scaffold_1072_3
Clostridium sp. CAG:571, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3524..5641
DNA (2118bp) protein (706aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:571 RepID=R5XRB8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA17160.1}; TaxID=1262822 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:571.;"
hypothetical protein
L3_072_000M1_scaffold_1072_4
Brachyspira murdochii, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

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5661..6314
DNA (654bp) protein (218aa)
MTA/SAH nucleosidase (EC:3.2.2.9)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; TaxID=526224 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira.;" source="Brachyspira murdochii (strain ATCC 51284 / DSM 12563 / 56-150); (Serpulina murdochii).;"
S-adenosylhomocysteine nucleosidase n=1 Tax=Brachyspira innocens RepID=UPI000378811D
L3_072_000M1_scaffold_1072_5
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

6429..7109
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GKR0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB25015.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
hypothetical protein
L3_072_000M1_scaffold_1072_6
unknown

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7136..7498
DNA (363bp) protein (121aa)

This feature has no annotations

L3_072_000M1_scaffold_1072_7
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

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7534..8475
DNA (942bp) protein (314aa)
DNA polymerase III delta subunit n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GI38_9FIRM
DNA polymerase III delta subunit {ECO:0000313|EMBL:CDB25103.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
DNA polymerase III subunit delta
L3_072_000M1_scaffold_1072_8
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

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8598..9443
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GKY5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB25100.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
hypothetical protein
L3_072_000M1_scaffold_1072_9
unknown

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9446..9667
DNA (222bp) protein (74aa)

This feature has no annotations

L3_072_000M1_scaffold_1072_10
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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9721..10902
DNA (1182bp) protein (394aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
aspartate kinase (EC:2.7.2.4)
Aspartokinase n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6V4X8_9FIRM
L3_072_000M1_scaffold_1072_11
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

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comp(11015..11497)
DNA (483bp) protein (161aa)
Ribosomal protein S20 n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GLA8_9FIRM
Ribosomal protein S20 {ECO:0000313|EMBL:CDB26263.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
RpsT; 30S ribosomal protein S20
L3_072_000M1_scaffold_1072_12
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

11627..12379
DNA (753bp) protein (251aa)
spore protease (EC:3.4.24.78)
Germination protease n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GYD4_9FIRM
Germination protease {ECO:0000313|EMBL:CDB26256.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
L3_072_000M1_scaffold_1072_13
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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12422..13126
DNA (705bp) protein (235aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 232.1.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I154_9CLOT
L3_072_000M1_scaffold_1072_14
unknown

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comp(13177..13761)
DNA (585bp) protein (195aa)

This feature has no annotations

L3_072_000M1_scaffold_1072_15
Selenomonas sp. oral taxon 138, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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13911..14828
DNA (918bp) protein (306aa)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=1127695 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. oral taxon 138 str. F0429.;"
fruK; 1-phosphofructokinase FruK (EC:2.7.1.56)
Tagatose-6-phosphate kinase n=1 Tax=Selenomonas sp. oral taxon 138 str. F0429 RepID=L1N0W7_9FIRM
L3_072_000M1_scaffold_1072_16
Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

14825..15187
DNA (363bp) protein (121aa)
ribonuclease h (EC:3.1.26.4)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=632335 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 /; I77R1B).;"
Ribonuclease H n=1 Tax=Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 / I77R1B) RepID=E4S860_CALKI
L3_072_000M1_scaffold_1072_17
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

15440..16207
DNA (768bp) protein (256aa)
Integral membrane protein n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GQW3_9FIRM
Integral membrane protein {ECO:0000313|EMBL:CDB26850.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
integral membrane protein
L3_072_000M1_scaffold_1072_18
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

16345..16647
DNA (303bp) protein (101aa)
Anti-sigma factor antagonist n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GU10_9FIRM
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
spoIIAA1; anti-sigma F factor antagonist SpoIIAA
L3_072_000M1_scaffold_1072_19
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

16660..17076
DNA (417bp) protein (139aa)
RsbW3; anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6HFC6_9FIRM
Anti-sigma F factor {ECO:0000313|EMBL:CDB24772.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
L3_072_000M1_scaffold_1072_20
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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17089..17805
DNA (717bp) protein (239aa)
RNA polymerase sigma factor n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K557_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
sigF; RNA polymerase sigma-F factor
L3_072_000M1_scaffold_1072_21
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

Not on your lists

17937..18410
DNA (474bp) protein (158aa)
Stage V sporulation protein AC n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6GMY1_9FIRM
Stage V sporulation protein AC {ECO:0000313|EMBL:CDB26828.1}; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
stage V sporulation protein AC
L3_072_000M1_scaffold_1072_22
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18506..19234)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HGN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE37372.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
repeat-containing protein
L3_072_000M1_scaffold_1072_23
unknown

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comp(19381..19734)
DNA (354bp) protein (118aa)

This feature has no annotations

L3_072_000M1_scaffold_1072_24
unknown

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19833..20069
DNA (237bp) protein (79aa)

This feature has no annotations

L3_072_000M1_scaffold_1072_25
Faecalibacterium sp. CAG:1138, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20066..21163
DNA (1098bp) protein (366aa)
Subtilisin-like serine protease n=1 Tax=Faecalibacterium sp. CAG:1138 RepID=R5FTW4_9FIRM
Subtilisin-like serine protease {ECO:0000313|EMBL:CCY04122.1}; TaxID=1262896 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:1138.;"
subtilisin-like serine protease
L3_072_000M1_scaffold_1072_26
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21447..22892
DNA (1446bp) protein (482aa)
Sugar (pentulose and hexulose) kinases (EC:2.7.1.5 2.7.1.51)
Carbohydrate kinase, FGGY family protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E8C1_9CLOT
Carbohydrate kinase, FGGY family protein {ECO:0000313|EMBL:EEG32286.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
L3_072_000M1_scaffold_1072_27
Treponema azotonutricium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

22895..24142
DNA (1248bp) protein (416aa)
rhaA; L-rhamnose isomerase (EC:5.3.1.14)
L-rhamnose isomerase {ECO:0000256|HAMAP-Rule:MF_00541}; EC=5.3.1.14 {ECO:0000256|HAMAP-Rule:MF_00541};; TaxID=545695 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9).;"
L-rhamnose isomerase n=1 Tax=Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9) RepID=F5YFE0_TREAZ
L3_072_000M1_scaffold_1072_28
Eubacterium sp. CAG:252, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24144..24992
DNA (849bp) protein (283aa)
Rhamnulose-1-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955}; EC=4.1.2.19 {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955};; TaxID=1262887 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:252.;"
Rhamnulose-1-phosphate aldolase n=1 Tax=Eubacterium sp. CAG:252 RepID=R6KCN2_9FIRM
rhamnulose-1-phosphate aldolase
L3_072_000M1_scaffold_1072_29
Staphylococcus sp. CAG:324, Tenericutes, Bacteria

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25299..26813
DNA (1515bp) protein (505aa)
Transporter CPA2 family n=1 Tax=Staphylococcus sp. CAG:324 RepID=R6TRX2_9STAP
Transporter CPA2 family {ECO:0000313|EMBL:CDC70651.1}; TaxID=1262969 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus; environmental samples.;" source="Staphylococcus sp. CAG:324.;"
transporter
L3_072_000M1_scaffold_1072_30
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26877..27638
DNA (762bp) protein (254aa)
Uncharacterized membrane protein n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FXZ2_9FIRM
Uncharacterized membrane protein {ECO:0000313|EMBL:CDE18592.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
Uncharacterized membrane protein
Displaying items 1-30 of 32 in total

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