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L3_072_000M1_scaffold_2135

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_2135_1
unknown

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1..126
DNA (126bp) protein (42aa)

This feature has no annotations

L3_072_000M1_scaffold_2135_2
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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174..839
DNA (666bp) protein (222aa)
DNA-binding response regulator RegX3 n=1 Tax=Roseburia sp. CAG:380 RepID=R6VU43_9FIRM
DNA-binding response regulator RegX3 {ECO:0000313|EMBL:CDC95636.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
winged helix family two component transcriptional regulator
L3_072_000M1_scaffold_2135_3
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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861..1865
DNA (1005bp) protein (335aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
Integral membrane sensor signal transduction histidine kinase n=7 Tax=Clostridium thermocellum RepID=A3DCU5_CLOTH
periplasmic sensor signal transduction histidine kinase
L3_072_000M1_scaffold_2135_4
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1972..2655
DNA (684bp) protein (228aa)
ABC transporter related protein n=7 Tax=Clostridium thermocellum RepID=A3DCU6_CLOTH
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ABN51775.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_072_000M1_scaffold_2135_5
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2652..5327
DNA (2676bp) protein (892aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0J708_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOT23513.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
hypothetical protein
L3_072_000M1_scaffold_2135_6
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5410..7080
DNA (1671bp) protein (557aa)
RNA polymerase sigma factor sigma-70 family n=1 Tax=Clostridium sp. CAG:448 RepID=R6T3A4_9CLOT
RNA polymerase sigma factor sigma-70 family {ECO:0000313|EMBL:CDC62246.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
sigma-70 family RNA polymerase sigma factor
L3_072_000M1_scaffold_2135_7
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7129..7701)
DNA (573bp) protein (191aa)
Ribose 5-phosphate isomerase RpiB (EC:5.3.1.6)
Sugar-phosphate isomerase, RpiB/LacA/LacB family n=2 Tax=Clostridiales RepID=A5ZYI6_9FIRM
Sugar-phosphate isomerase, RpiB/LacA/LacB family {ECO:0000313|EMBL:EDM85339.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
L3_072_000M1_scaffold_2135_8
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7804..9165)
DNA (1362bp) protein (454aa)
MATE efflux family protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RTM3_9FIRM
Multidrug transporter MatE {ECO:0000313|EMBL:KJF40185.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
putative efflux protein, MATE family
L3_072_000M1_scaffold_2135_9
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9230..9670)
DNA (441bp) protein (147aa)
fucose isomerase n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI00036376E5
Uncharacterized protein {ECO:0000313|EMBL:CCX37830.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
RbsD or FucU transport
L3_072_000M1_scaffold_2135_10
Sphaerochaeta globosa, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(9839..10144)
DNA (306bp) protein (102aa)
Helix-turn-helix domain protein n=1 Tax=Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy) RepID=F0RXE3_SPHGB
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADY11993.1}; TaxID=158189 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy); (Spirochaeta sp. (strain Buddy)).;"
L3_072_000M1_scaffold_2135_11
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10626..11063)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B8 RepID=N9Z4U0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ34685.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
hypothetical protein
L3_072_000M1_scaffold_2135_12
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12110..12265)
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9JCZ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS31993.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
L3_072_000M1_scaffold_2135_13
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12482..14377)
DNA (1896bp) protein (632aa)
Lysyl-tRNA synthetase (class II) (EC:6.1.1.6)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Lysine--tRNA ligase n=2 Tax=root RepID=D4JR73_9FIRM
L3_072_000M1_scaffold_2135_14
Faecalibacterium sp. CAG:1138, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14403..14885)
DNA (483bp) protein (161aa)
Transcription elongation factor GreA n=1 Tax=Faecalibacterium sp. CAG:1138 RepID=R5FIB0_9FIRM
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1262896 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:1138.;"
greA; transcription elongation factor GreA
L3_072_000M1_scaffold_2135_15
Ruminococcus sp. CAG:382, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15150..16019)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:382 RepID=R6W9T9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD03579.1}; TaxID=1262957 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:382.;"
hypothetical protein
L3_072_000M1_scaffold_2135_16
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16130..17320)
DNA (1191bp) protein (397aa)
Putative 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000313|EMBL:AGC69315.1}; EC=2.3.1.29 {ECO:0000313|EMBL:AGC69315.1};; EC=2.3.1.47 {ECO:0000313|EMBL:AGC69315.1};; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
7-keto-8-aminopelargonate synthetase n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VM73_CLOSH
7-keto-8-aminopelargonate synthetase
L3_072_000M1_scaffold_2135_17
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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17646..18380
DNA (735bp) protein (245aa)
atpB; F-type ATP synthase subunit A (EC:3.6.3.14)
ATP synthase subunit a n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TRM1_9FIRM
Tax=BJP_IG2157_Clostridiales_52_13
L3_072_000M1_scaffold_2135_18
Butyrivibrio proteoclasticus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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18554..18763
DNA (210bp) protein (70aa)
atpE2; ATP synthase F0 subunit C (EC:3.6.3.14)
ATP synthase F0 C subunit AtpE2 n=1 Tax=Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316) RepID=E0S273_BUTPB
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; TaxID=515622 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316); (Clostridium proteoclasticum).;"
L3_072_000M1_scaffold_2135_19
Bacillus thermoamylovorans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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18803..19297
DNA (495bp) protein (165aa)
atpF; ATP synthase F0 subunit B (EC:3.6.3.14)
ATP synthase subunit b n=1 Tax=Clostridium sp. CAG:352 RepID=R6QVS2_9CLOT
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=35841 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus thermoamylovorans.;"
L3_072_000M1_scaffold_2135_20
unknown

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19287..19508
DNA (222bp) protein (74aa)

This feature has no annotations

L3_072_000M1_scaffold_2135_21
Thermoanaerobacter ethanolicus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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19521..21026
DNA (1506bp) protein (502aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=509192 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter ethanolicus JW 200.;"
ATP synthase subunit alpha n=1 Tax=Thermoanaerobacter ethanolicus JW 200 RepID=F1ZWW7_THEET
ATP synthase F1 subunit alpha
L3_072_000M1_scaffold_2135_22
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21044..21937
DNA (894bp) protein (298aa)
atpG; ATP synthase F1, gamma subunit (EC:3.6.3.14)
ATP synthase gamma chain n=1 Tax=Clostridium papyrosolvens C7 RepID=U4R710_9CLOT
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
L3_072_000M1_scaffold_2135_23
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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21943..23337
DNA (1395bp) protein (465aa)
F0F1 ATP synthase subunit beta (EC:3.6.3.14)
ATP synthase subunit beta {ECO:0000255|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000255|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000255|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000255|HAMAP-Rule:MF_01347}; TaxID=264732 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella thermoacetica (strain ATCC 39073).;"
ATP synthase subunit beta n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=ATPB_MOOTA
L3_072_000M1_scaffold_2135_24
Paenibacillus sp. TCA20, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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23384..23806
DNA (423bp) protein (141aa)
ATP synthase epsilon chain n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6U424_9FIRM
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=1499968 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. TCA20.;"
ATP synthase F1 subunit epsilon
L3_072_000M1_scaffold_2135_25
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(24074..25465)
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D1G3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX73998.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
L3_072_000M1_scaffold_2135_26
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26052..27023)
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6R2B9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC39344.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
L3_072_000M1_scaffold_2135_27
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27555..29012
DNA (1458bp) protein (486aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IU78_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY43874.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Orn/Lys/Arg decarboxylase major region
L3_072_000M1_scaffold_2135_28
Catonella morbi, Catonella, Clostridiales, Clostridia, Firmicutes, Bacteria

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29025..29885
DNA (861bp) protein (287aa)
speE; putative spermidine synthase (EC:2.5.1.16)
Spermidine synthase n=1 Tax=Catonella morbi ATCC 51271 RepID=V2Y7K0_9FIRM
Polyamine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Putrescine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Spermidine synthase {ECO:0000256|HAMAP-Rule:MF_00198}; TaxID=592026 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Catonella.;" source="Catonella morbi ATCC 51271.;"
L3_072_000M1_scaffold_2135_29
Catonella morbi, Catonella, Clostridiales, Clostridia, Firmicutes, Bacteria

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29938..30147
DNA (210bp) protein (70aa)
carboxynorspermidine dehydrogenase (EC:1.5.1.7)
Saccharopine dehydrogenase n=1 Tax=Catonella morbi ATCC 51271 RepID=V2Z9Q8_9FIRM
Saccharopine dehydrogenase {ECO:0000313|EMBL:ESL03650.1}; TaxID=592026 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Catonella.;" source="Catonella morbi ATCC 51271.;"
Displaying 29 items

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