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L3_072_000M1_scaffold_2215

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_2215_1
unknown

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3..128
DNA (126bp) protein (42aa)

This feature has no annotations

L3_072_000M1_scaffold_2215_2
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

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282..1604
DNA (1323bp) protein (441aa)
Diaminopimelate decarboxylase n=1 Tax=Thermincola potens (strain JR) RepID=D5X7C0_THEPJ
diaminopimelate decarboxylase
Tax=BJP_08E140C01_Clostridiales_46_19
L3_072_000M1_scaffold_2215_3
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1624..2943
DNA (1320bp) protein (440aa)
Segregation and condensation protein A n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K5G2_9FIRM
Segregation and condensation protein A {ECO:0000256|HAMAP-Rule:MF_01805, ECO:0000256|SAAS:SAAS00093938}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
peptidase M50
L3_072_000M1_scaffold_2215_4
Corallococcus sp. CAG:1435, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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2947..3483
DNA (537bp) protein (179aa)
Segregation and condensation protein B n=1 Tax=Corallococcus sp. CAG:1435 RepID=R5VUM4_9DELT
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=1262867 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus; environmental samples.;" source="Corallococcus sp. CAG:1435.;"
chromosome segregation and condensation protein ScpB
L3_072_000M1_scaffold_2215_5
unknown

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3542..4087
DNA (546bp) protein (182aa)

This feature has no annotations

L3_072_000M1_scaffold_2215_6
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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4068..4505
DNA (438bp) protein (146aa)
Sporulation protein YtfJ n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZXW5_MAHA5
sporulation protein YtfJ
Sporulation protein YtfJ {ECO:0000313|EMBL:AEE96635.1}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_072_000M1_scaffold_2215_7
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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4630..5262
DNA (633bp) protein (211aa)
Serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CFK9_9CLOT
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:KGG81391.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
L3_072_000M1_scaffold_2215_8
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5459..6169
DNA (711bp) protein (237aa)
rluB2; ribosomal large subunit pseudouridine synthase B (EC:5.4.99.22)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Pseudouridine synthase n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MJW8_9CLOT
L3_072_000M1_scaffold_2215_9
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6185..7084
DNA (900bp) protein (300aa)
Radical SAM domain protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NKS8_9CLOT
Radical SAM domain protein {ECO:0000313|EMBL:CDC08949.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
radical SAM protein
L3_072_000M1_scaffold_2215_10
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

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7093..8133
DNA (1041bp) protein (347aa)
Putative transcriptional regulator n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2CZB2_9FIRM
Putative transcriptional regulator {ECO:0000313|EMBL:ERI89895.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
cggR; central glycolytic regulator
L3_072_000M1_scaffold_2215_11
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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8214..9404
DNA (1191bp) protein (397aa)
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
Phosphoglycerate kinase n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZYC9_MAHA5
L3_072_000M1_scaffold_2215_12
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9492..10238
DNA (747bp) protein (249aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AFT4_9CLOT
L3_072_000M1_scaffold_2215_13
Faecalibacterium sp. CAG:1138, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10254..11804
DNA (1551bp) protein (517aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=1262896 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:1138.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Faecalibacterium sp. CAG:1138 RepID=R5FGA6_9FIRM
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
L3_072_000M1_scaffold_2215_14
Peptoniphilus indolicus, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11987..12481
DNA (495bp) protein (165aa)
Protein translocase subunit SecA n=1 Tax=Peptoniphilus indolicus ATCC 29427 RepID=G4D3U4_9FIRM
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=997350 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus indolicus ATCC 29427.;"
secA; Protein translocase subunit SecA
L3_072_000M1_scaffold_2215_15
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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12551..14668
DNA (2118bp) protein (706aa)
Protein translocase subunit SecA n=1 Tax=Thermoanaerobacterium thermosaccharolyticum M0795 RepID=L0INN4_THETR
preprotein translocase, SecA subunit
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=698948 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium thermosaccharolyticum M0795.;"
L3_072_000M1_scaffold_2215_16
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14770..15810
DNA (1041bp) protein (347aa)
Peptide chain release factor 2 n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AQ03_9CLOT
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
bacterial peptide chain release factor 2 (bRF-2)
L3_072_000M1_scaffold_2215_17
unknown

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15830..16567
DNA (738bp) protein (246aa)

This feature has no annotations

L3_072_000M1_scaffold_2215_18
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

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16610..17671
DNA (1062bp) protein (354aa)
glycoprotease family metalloendopeptidase (EC:3.4.24.57)
Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp id=2232951 bin=GWB2_Clostridiales_37_7 species=[Clostridium] sticklandii genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
Tax=GWB2_Clostridiales_37_7_curated
L3_072_000M1_scaffold_2215_19
Firmicutes bacterium CAG:791, Firmicutes, Bacteria

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comp(18126..19232)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:791 RepID=R5CRG5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX66321.1}; TaxID=1262993 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:791.;"
Site-specific recombinase XerD
L3_072_000M1_scaffold_2215_20
Guillardia theta, Guillardia, Pyrenomonadales, Cryptophyta, Eukaryota

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comp(19307..19894)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Guillardia theta CCMP2712 RepID=L1IJW8_GUITH
Uncharacterized protein {ECO:0000313|EMBL:EKX36543.1, ECO:0000313|EnsemblProtists:EKX36543}; TaxID=905079 species="Eukaryota; Cryptophyta; Pyrenomonadales; Geminigeraceae; Guillardia.;" source="Guillardia theta CCMP2712.;"
L3_072_000M1_scaffold_2215_21
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19917..21347)
DNA (1431bp) protein (477aa)
Nicotinate phosphoribosyltransferase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B3S0_9CLOT
putative nicotinate phosphoribosyltransferase
Tax=BJP_IG2157_Clostridiales_52_13
L3_072_000M1_scaffold_2215_22
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21367..22332)
DNA (966bp) protein (322aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
Prolipoprotein diacylglyceryl transferase n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LYN6_CLOCD
prolipoprotein diacylglyceryl transferase
Displaying 22 items

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