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L3_072_000M1_scaffold_742

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_742_1
Firmicutes bacterium CAG:534, Firmicutes, Bacteria

Not on your lists

1..1077
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZIP7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD48358.1}; TaxID=1263027 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:534.;"
hypothetical protein
L3_072_000M1_scaffold_742_2
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1091..1927
DNA (837bp) protein (279aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2PTJ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65245.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_072_000M1_scaffold_742_3
Faecalibacterium sp. CAG:1138, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2338..2910
DNA (573bp) protein (191aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=1262896 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:1138.;"
xanthine phosphoribosyltransferase (EC:2.4.2.22)
Xanthine phosphoribosyltransferase n=1 Tax=Faecalibacterium sp. CAG:1138 RepID=R5FT71_9FIRM
L3_072_000M1_scaffold_742_4
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

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2971..4200
DNA (1230bp) protein (410aa)
Bmp family protein n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6I352_9FIRM
Bmp family protein {ECO:0000313|EMBL:CDB44563.1}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
Bmp family protein
L3_072_000M1_scaffold_742_5
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4315..6111
DNA (1797bp) protein (599aa)
nucleoside ABC transporter ATP-binding protein (EC:3.6.3.17)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:448 RepID=R6SXX2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC60281.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
L3_072_000M1_scaffold_742_6
Anaerotruncus sp. CAG:528, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6104..7306
DNA (1203bp) protein (401aa)
Inner-membrane translocator n=1 Tax=Anaerotruncus sp. CAG:528 RepID=R5Y6X7_9FIRM
Inner-membrane translocator {ECO:0000313|EMBL:CDA12397.1}; TaxID=1262700 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:528.;"
ABC transporter permease
L3_072_000M1_scaffold_742_7
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7303..8262
DNA (960bp) protein (320aa)
ABC transporter permease protein n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FVX4_9FIRM
ABC transporter permease protein {ECO:0000313|EMBL:CDE19439.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
nucleoside ABC transporter membrane protein
L3_072_000M1_scaffold_742_8
unknown

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8521..9504
DNA (984bp) protein (328aa)

This feature has no annotations

L3_072_000M1_scaffold_742_9
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9509..10222
DNA (714bp) protein (238aa)
RNA polymerase sigma factor n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LX86_CLOCD
RNA polymerase sigma-29 subunit SigE
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
L3_072_000M1_scaffold_742_10
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10463..11263)
DNA (801bp) protein (267aa)
Transcriptional regulator with cupin sensor, AraC family n=1 Tax=Spirochaeta thermophila (strain ATCC 700085 / DSM 6578 / Z-1203) RepID=G0GE20_SPITZ
AraC family transcriptional regulator
AraC family transcriptional regulator {ECO:0000313|EMBL:EHK56101.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
L3_072_000M1_scaffold_742_11
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

11387..12136
DNA (750bp) protein (250aa)
3-oxoacyl-(Acyl-carrier-protein) reductase id=3988704 bin=GWF2_Lentisphaerae_49_21 species=Opitutaceae bacterium TAV1 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
oxidoreductase
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
L3_072_000M1_scaffold_742_12
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

12145..12957
DNA (813bp) protein (271aa)
3-dehydroquinate dehydratase n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AU30_9BACT
3-dehydroquinate dehydratase {ECO:0000313|EMBL:EIP98521.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
3-dehydroquinate dehydratase
L3_072_000M1_scaffold_742_13
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13283..13579
DNA (297bp) protein (99aa)
RNA polymerase sigma factor n=1 Tax=Eubacterium sp. CAG:603 RepID=R5NLZ4_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
sigG1; sporulation-specific RNA polymerase sigma-G factor SigG
L3_072_000M1_scaffold_742_14
unknown

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13615..15066
DNA (1452bp) protein (484aa)

This feature has no annotations

L3_072_000M1_scaffold_742_15
unknown

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comp(15114..15356)
DNA (243bp) protein (81aa)

This feature has no annotations

L3_072_000M1_scaffold_742_16
Faecalibacterium sp. CAG:1138, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15448..16092)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:1138 RepID=R5FX14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY04751.1}; TaxID=1262896 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:1138.;"
L3_072_000M1_scaffold_742_17
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16646..17194
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UKU4_RUMA7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU24290.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L3_072_000M1_scaffold_742_18
Selenomonas ruminantium, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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17197..18018
DNA (822bp) protein (274aa)
Putative carbon-carbon lyase n=1 Tax=Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) RepID=I0GRR0_SELRL
putative carbon-carbon lyase
Putative carbon-carbon lyase {ECO:0000313|EMBL:BAL83447.1}; TaxID=927704 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 /; TAM6421).;"
L3_072_000M1_scaffold_742_19
Prevotella sp. P5-119, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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18020..19240
DNA (1221bp) protein (407aa)
Pyridoxal-dependent decarboxylase, pyridoxal binding domain protein n=1 Tax=Bacteroides ovatus ATCC 8483 RepID=A7M0P9_BACOV
Contig53, whole genome shotgun sequence {ECO:0000313|EMBL:KIP62512.1}; TaxID=1602171 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella sp. P5-119.;"
putative pyridoxal-dependent decarboxylase
L3_072_000M1_scaffold_742_20
Lactobacillus ruminis, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19240..19968
DNA (729bp) protein (243aa)
Glycosyltransferase n=1 Tax=Lactobacillus ruminis (strain ATCC 27782 / RF3) RepID=G2SPZ9_LACRR
glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:AEN77425.1}; TaxID=1069534 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus ruminis (strain ATCC 27782 / RF3).;"
L3_072_000M1_scaffold_742_21
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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19984..20910
DNA (927bp) protein (309aa)
Branched-chain-amino-acid transaminase {ECO:0000313|EMBL:EFF69501.1}; EC=2.6.1.42 {ECO:0000313|EMBL:EFF69501.1};; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
Branched-chain-amino-acid transaminase n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GDI0_EUBLK
branched-chain-amino-acid transaminase
L3_072_000M1_scaffold_742_22
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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20927..21694
DNA (768bp) protein (256aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFF69500.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFF69500.1};; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4RX60_9FIRM
family 2 glycosyl transferase
L3_072_000M1_scaffold_742_23
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21709..22488
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:603 RepID=R5NHU1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ03730.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
hypothetical protein
L3_072_000M1_scaffold_742_24
unknown

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22488..23783
DNA (1296bp) protein (432aa)

This feature has no annotations

L3_072_000M1_scaffold_742_25
Megasphaera sp. BV3C16-1, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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23752..24621
DNA (870bp) protein (290aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:ERT62271.1}; EC=2.4.-.- {ECO:0000313|EMBL:ERT62271.1};; TaxID=1111454 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. BV3C16-1.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Megasphaera sp. BV3C16-1 RepID=U7USL7_9FIRM
group 2 glycosyl transferase
L3_072_000M1_scaffold_742_26
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24618..25514
DNA (897bp) protein (299aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=1341156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus SY3.;"
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Ruminococcus albus 8 RepID=E9SGB0_RUMAL
glucose-1-phosphate thymidylyltransferase
L3_072_000M1_scaffold_742_27
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25534..26388
DNA (855bp) protein (285aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:CBL16377.1}; EC=1.1.1.133 {ECO:0000313|EMBL:CBL16377.1};; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
dTDP-4-dehydrorhamnose reductase n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4L9T2_RUMC1
L3_072_000M1_scaffold_742_28
Bacillus bataviensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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26402..27844
DNA (1443bp) protein (481aa)
Polysaccharide transporter n=1 Tax=Bacillus bataviensis LMG 21833 RepID=K6DSJ8_9BACI
Polysaccharide transporter {ECO:0000313|EMBL:EKN71334.1}; TaxID=1117379 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus bataviensis LMG 21833.;"
hypothetical protein
L3_072_000M1_scaffold_742_29
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27831..28400
DNA (570bp) protein (190aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3 5-epimerase n=1 Tax=Eubacterium sp. CAG:161 RepID=R5LA01_9FIRM
dTDP-4-dehydrorhamnose 3 5-epimerase {ECO:0000313|EMBL:CCY70076.1}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
L3_072_000M1_scaffold_742_30
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28393..29418
DNA (1026bp) protein (342aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UEK9_RUMA7
dTDP-glucose 4,6-dehydratase
Displaying items 1-30 of 36 in total

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