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L3_072_000M1_scaffold_3364

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_3364_1
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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80..3517
DNA (3438bp) protein (1146aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7FYF8_9PROT
DNA-directed RNA polymerase subunit beta
L3_072_000M1_scaffold_3364_2
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3533..7117
DNA (3585bp) protein (1195aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Subdoligranulum sp. CAG:314 RepID=R7K774_9FIRM
L3_072_000M1_scaffold_3364_3
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7268..7639
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G2V4_9PROT
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
ribosomal protein S12
L3_072_000M1_scaffold_3364_4
Firmicutes bacterium CAG:475, Firmicutes, Bacteria

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7839..8309
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Firmicutes bacterium CAG:475 RepID=R7BRF7_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1263026 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:475.;"
rpsG; 30S ribosomal protein S7
L3_072_000M1_scaffold_3364_5
Firmicutes bacterium CAG:552, Firmicutes, Bacteria

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8320..10392
DNA (2073bp) protein (691aa)
Elongation factor G n=1 Tax=Firmicutes bacterium CAG:552 RepID=R6H059_9FIRM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1263029 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:552.;"
translation elongation factor EF-G
L3_072_000M1_scaffold_3364_6

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10542..11759
DNA (1218bp) protein (406aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Clostridium sp. CAG:349 RepID=R6WYK3_9CLOT
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1393435 species="Bacteria; environmental samples.;" source="uncultured bacterium Contig1480.;"
L3_072_000M1_scaffold_3364_7
unknown

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12017..12445
DNA (429bp) protein (143aa)

This feature has no annotations

L3_072_000M1_scaffold_3364_8
Clostridium sp. CAG:448, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12493..12771
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:448 RepID=R6SXX4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC62374.1}; TaxID=1262808 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:448.;"
hypothetical protein
Displaying 8 items

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