ggKbase home page

L3_072_000M1_scaffold_296

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_072_000M1_scaffold_296_1
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

168..467
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80082.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L3_072_000M1_scaffold_296_2
Fusobacterium periodonticum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

504..824
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EJM3_CLOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGE62200.1}; TaxID=469599 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium periodonticum 2_1_31.;"
L3_072_000M1_scaffold_296_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(906..1169)
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAC3_9FIRM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
SSU ribosomal protein S20P
L3_072_000M1_scaffold_296_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

1282..2211
DNA (930bp) protein (310aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAC4_9FIRM
L3_072_000M1_scaffold_296_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

2222..4024
DNA (1803bp) protein (601aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Elongation factor 4 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAC5_9FIRM
GTP-binding protein LepA
L3_072_000M1_scaffold_296_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

4024..5103
DNA (1080bp) protein (360aa)
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:EEC90272.1}; EC=1.3.99.22 {ECO:0000313|EMBL:EEC90272.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Putative oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAC6_9FIRM
L3_072_000M1_scaffold_296_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


5178..5459
DNA (282bp) protein (94aa)
30S ribosomal protein S15 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAC7_9FIRM
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
SSU ribosomal protein S15P
L3_072_000M1_scaffold_296_8
Eubacterium sp. CAG:86, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5505..5963
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:86 RepID=R5E977_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84711.1}; TaxID=1262895 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:86.;"
hypothetical protein
L3_072_000M1_scaffold_296_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

6073..8214
DNA (2142bp) protein (714aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Polyribonucleotide nucleotidyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAC8_9FIRM
polynucleotide phosphorylase/polyadenylase
L3_072_000M1_scaffold_296_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

8289..9677
DNA (1389bp) protein (463aa)
Putative dipeptidase {ECO:0000313|EMBL:EEC90275.1}; EC=3.4.13.- {ECO:0000313|EMBL:EEC90275.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
dipeptidase, putative (EC:3.5.1.18)
Putative dipeptidase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAC9_9FIRM
L3_072_000M1_scaffold_296_11
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

9679..10320
DNA (642bp) protein (214aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD0_9FIRM
trmB; tRNA (guanine-N(7)-)-methyltransferase
L3_072_000M1_scaffold_296_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

10313..10651
DNA (339bp) protein (113aa)
Thioredoxin n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD1_9FIRM
Thioredoxin {ECO:0000313|EMBL:EEC90277.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Thioredoxin.
L3_072_000M1_scaffold_296_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

10645..11301
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90278.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_296_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11303..12610
DNA (1308bp) protein (436aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000313|EMBL:EEC90279.1}; EC=6.3.2.8 {ECO:0000313|EMBL:EEC90279.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD3_9FIRM
L3_072_000M1_scaffold_296_15
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

12698..13912
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90280.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
AAA+ superfamily ATPase
L3_072_000M1_scaffold_296_16
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

14152..14502
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90281.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_296_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

14504..15037
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90282.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_296_18
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15040..16047
DNA (1008bp) protein (336aa)
Catabolite control protein A n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD7_9FIRM
Catabolite control protein A {ECO:0000313|EMBL:EEC90283.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
transcriptional regulator, LacI family
L3_072_000M1_scaffold_296_19
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

16092..16547
DNA (456bp) protein (152aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Endoribonuclease YbeY n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD8_9FIRM
conserved hypothetical protein TIGR00043
L3_072_000M1_scaffold_296_20
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

16528..16875
DNA (348bp) protein (116aa)
Diacylglycerol kinase (EC:2.7.1.107)
Prokaryotic diacylglycerol kinase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD9_9FIRM
Prokaryotic diacylglycerol kinase {ECO:0000313|EMBL:EEC90285.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_072_000M1_scaffold_296_21
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

16888..17796
DNA (909bp) protein (303aa)
GTPase Era n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE0_9FIRM
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
GTP-binding protein Era
L3_072_000M1_scaffold_296_22
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

17786..18508
DNA (723bp) protein (241aa)
DNA repair protein RecO n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE1_9FIRM
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
DNA repair protein RecO
L3_072_000M1_scaffold_296_23
unknown

Not on your lists

18508..18612
DNA (105bp) protein (35aa)

This feature has no annotations

L3_072_000M1_scaffold_296_24
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

18597..18896
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90288.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L3_072_000M1_scaffold_296_25
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


19037..20467
DNA (1431bp) protein (477aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
glyS; Glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE3_9FIRM
L3_072_000M1_scaffold_296_26
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

20467..22233
DNA (1767bp) protein (589aa)
DNA primase {ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|SAAS:SAAS00051045};; Flags: Fragment;; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
DNA primase (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE4_9FIRM
dnaG; DNA primase
L3_072_000M1_scaffold_296_27
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

22238..23467
DNA (1230bp) protein (410aa)
RNA polymerase sigma factor SigA n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE6_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
RNA polymerase, sigma 70 subunit, RpoD
L3_072_000M1_scaffold_296_28
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

23467..24120
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90260.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
methyltransferase
L3_072_000M1_scaffold_296_29
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(24105..25004)
DNA (900bp) protein (300aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE8_9FIRM
L3_072_000M1_scaffold_296_30
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

25086..26408
DNA (1323bp) protein (441aa)
DEAD/DEAH box helicase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE9_9FIRM
DEAD/DEAH box helicase {ECO:0000313|EMBL:EEC90262.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ATP-dependent RNA helicase
Displaying items 1-30 of 66 in total

View Taxonomy