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L3_079_062G2_scaffold_244

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_079_062G2_scaffold_244_1
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(134..1408)
DNA (1275bp) protein (425aa)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.49)
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase n=4 Tax=Clostridiales RepID=A7AZ54_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ66199.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_079_062G2_scaffold_244_2
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1405..2178)
DNA (774bp) protein (258aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z181_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB92183.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L3_079_062G2_scaffold_244_3
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2191..2922)
DNA (732bp) protein (244aa)
Probable transcriptional regulatory protein RUMTOR_02688 n=4 Tax=Lachnospiraceae RepID=A5KQZ6_9FIRM
Probable transcriptional regulatory protein HMPREF1025_00097 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
conserved hypothetical protein TIGR01033
L3_079_062G2_scaffold_244_4
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3032..3376)
DNA (345bp) protein (115aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
mRNA interferase n=5 Tax=Clostridiales RepID=A5KQZ5_9FIRM
transcriptional modulator of MazE/toxin MazF
L3_079_062G2_scaffold_244_5
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3499..4647)
DNA (1149bp) protein (383aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Lachnospiraceae bacterium 8_1_57FAA RepID=E5XE07_9FIRM
L3_079_062G2_scaffold_244_6
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4651..6153)
DNA (1503bp) protein (501aa)
YjeF domain protein n=2 Tax=Ruminococcus lactaris RepID=B5CRI4_9FIRM
YjeF domain protein {ECO:0000313|EMBL:EDY31922.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region
L3_079_062G2_scaffold_244_7
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6255..6935)
DNA (681bp) protein (227aa)
Redox-sensing transcriptional repressor Rex n=4 Tax=Clostridiales RepID=A5KQZ0_9FIRM
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
CoA-binding protein
L3_079_062G2_scaffold_244_8
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7169..9139
DNA (1971bp) protein (657aa)
ABC transporter, ATP-binding protein n=4 Tax=Lachnospiraceae RepID=A5KKD4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG79650.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
ATPase components of ABC transporters with duplicated ATPase domains
L3_079_062G2_scaffold_244_9
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9402..12041)
DNA (2640bp) protein (880aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine-tRNA ligase n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C521_9FIRM
L3_079_062G2_scaffold_244_10
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12398..12775
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YX43_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB93531.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L3_079_062G2_scaffold_244_11
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12765..13361
DNA (597bp) protein (199aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YXM8_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB93716.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L3_079_062G2_scaffold_244_12
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13498..13722
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C9T9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE13551.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Predicted transcriptional regulator
L3_079_062G2_scaffold_244_13
Oribacterium asaccharolyticum, Oribacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13736..14494
DNA (759bp) protein (253aa)
Putative uncharacterized protein n=1 Tax=Oribacterium sp. ACB7 RepID=G9WS19_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL14109.1}; TaxID=796944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium.;" source="Oribacterium asaccharolyticum ACB7.;"
CAAX amino protease
L3_079_062G2_scaffold_244_14
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14591..15226)
DNA (636bp) protein (212aa)
Helix-turn-helix n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K6M4_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL00487.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_079_062G2_scaffold_244_15
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15391..16299
DNA (909bp) protein (303aa)
Site-specific recombinases, DNA invertase Pin homologs n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K6N3_9FIRM
Site-specific recombinases, DNA invertase Pin homologs
Site-specific recombinases, DNA invertase Pin homologs {ECO:0000313|EMBL:CBL00496.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_079_062G2_scaffold_244_16
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16437..16745
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6EJ71_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA97369.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
L3_079_062G2_scaffold_244_17
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17277..17855)
DNA (579bp) protein (193aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
anaerobic ribonucleoside-triphosphate reductase activating protein (EC:1.97.1.4)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=2 Tax=unclassified Lachnospiraceae RepID=E5XDC6_9FIRM
L3_079_062G2_scaffold_244_18
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17898..20057)
DNA (2160bp) protein (720aa)
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=4 Tax=Lachnospiraceae RepID=A5KJF9_9FIRM
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:EFV20702.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L3_079_062G2_scaffold_244_19
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20386..21801)
DNA (1416bp) protein (472aa)
Amino acid carrier protein n=5 Tax=Clostridiales RepID=A5KJF7_9FIRM
Amino acid carrier protein {ECO:0000313|EMBL:EDK25460.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
amino acid carrier protein
L3_079_062G2_scaffold_244_20
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22875..24059)
DNA (1185bp) protein (395aa)
Chaperone protein DnaJ n=2 Tax=Lachnospiraceae RepID=F7JJJ2_9FIRM
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
chaperone protein DnaJ
L3_079_062G2_scaffold_244_21
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24210..26093)
DNA (1884bp) protein (628aa)
Chaperone protein DnaK n=5 Tax=Clostridiales RepID=A5KJW2_9FIRM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
chaperone protein DnaK
L3_079_062G2_scaffold_244_22
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26250..26942)
DNA (693bp) protein (231aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=V8C489_9FIRM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
heat shock protein GrpE
L3_079_062G2_scaffold_244_23
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26970..28019)
DNA (1050bp) protein (350aa)
Heat-inducible transcription repressor HrcA n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C561_9FIRM
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
heat-inducible transcription repressor HrcA
L3_079_062G2_scaffold_244_24
Treponema lecithinolyticum, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(28215..32987)
DNA (4773bp) protein (1591aa)
Uncharacterized protein n=1 Tax=Treponema lecithinolyticum ATCC 700332 RepID=U2K4Z5_TRELE
Uncharacterized protein {ECO:0000313|EMBL:ERJ93546.1}; TaxID=1321815 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema lecithinolyticum ATCC 700332.;"
LPXTG-motif cell wall anchor domain-containing protein
L3_079_062G2_scaffold_244_25
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33135..34382)
DNA (1248bp) protein (416aa)
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Oxygen-independent coproporphyrinogen III oxidase n=5 Tax=Clostridiales RepID=E5XDJ0_9FIRM
Oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:EFV20537.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L3_079_062G2_scaffold_244_26
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(34375..36189)
DNA (1815bp) protein (605aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Elongation factor 4 n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C3D9_9FIRM
GTP-binding protein LepA
L3_079_062G2_scaffold_244_27
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36211..37194)
DNA (984bp) protein (328aa)
DNA polymerase III, delta subunit (EC:2.7.7.7)
DNA polymerase III n=1 Tax=Lachnospiraceae bacterium 3_1_46FAA RepID=F3ARG4_9FIRM
DNA polymerase III {ECO:0000313|EMBL:EGG89173.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L3_079_062G2_scaffold_244_28
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37199..38833)
DNA (1635bp) protein (545aa)
ABC transporter, ATP-binding protein n=5 Tax=Clostridiales RepID=A5KJX0_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDK25623.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
ATPase components of ABC transporters with duplicated ATPase domains
L3_079_062G2_scaffold_244_29
unknown

Not on your lists

38968..39132
DNA (165bp) protein (55aa)

This feature has no annotations

L3_079_062G2_scaffold_244_30
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39086..39568
DNA (483bp) protein (161aa)
Sporulation initiation factor Spo0A C terminal n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZB9_9FIRM
Sporulation initiation factor Spo0A C terminal.
Sporulation initiation factor Spo0A C terminal {ECO:0000313|EMBL:CBL27129.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Displaying items 1-30 of 43 in total

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