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L3_101_367G1_scaffold_6

Search features with annotation key words

Displaying items 1-30 of 222 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_101_367G1_scaffold_6_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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144..302
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QK29_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22312.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_101_367G1_scaffold_6_2
unknown

Not on your lists

460..636
DNA (177bp) protein (59aa)

This feature has no annotations

L3_101_367G1_scaffold_6_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

629..1546
DNA (918bp) protein (306aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PUX0_9CLOT
signal transduction histidine kinase
L3_101_367G1_scaffold_6_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1678..2355
DNA (678bp) protein (226aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=B6FV82_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22310.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_101_367G1_scaffold_6_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2355..3836
DNA (1482bp) protein (494aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Clostridium RepID=B6FV81_9CLOT
Signal transduction histidine kinase
L3_101_367G1_scaffold_6_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3854..4462
DNA (609bp) protein (203aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC:2.4.2.-)
Imidazole glycerol phosphate synthase subunit HisH n=2 Tax=Clostridium RepID=B6FV80_9CLOT
L3_101_367G1_scaffold_6_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4474..5235
DNA (762bp) protein (254aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
imidazoleglycerol phosphate synthase, cyclase subunit (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF n=2 Tax=Clostridium RepID=B6FV79_9CLOT
L3_101_367G1_scaffold_6_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5249..5923
DNA (675bp) protein (225aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=2 Tax=Clostridium RepID=B6FV78_9CLOT
L3_101_367G1_scaffold_6_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6070..8304
DNA (2235bp) protein (745aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFD7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22305.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_101_367G1_scaffold_6_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8437..8796
DNA (360bp) protein (120aa)
Transcriptional regulator, ArsR family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV75_9CLOT
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:EEA80093.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_101_367G1_scaffold_6_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8820..10682
DNA (1863bp) protein (621aa)
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:EEA80092.1}; EC=3.6.3.- {ECO:0000313|EMBL:EEA80092.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Heavy metal translocating P-type ATPase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV74_9CLOT
cadmium-translocating P-type ATPase
L3_101_367G1_scaffold_6_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10699..11223
DNA (525bp) protein (175aa)
Tetratricopeptide repeat protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV73_9CLOT
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EEA80091.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Tetratricopeptide repeat.
L3_101_367G1_scaffold_6_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11233..12483
DNA (1251bp) protein (417aa)
GTPase HflX n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV72_9CLOT
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
GTP-binding proten HflX
L3_101_367G1_scaffold_6_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12480..13103
DNA (624bp) protein (208aa)
Putative rRNA methylase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV71_9CLOT
Putative rRNA methylase {ECO:0000313|EMBL:EEA80089.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis
L3_101_367G1_scaffold_6_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12985..13878)
DNA (894bp) protein (298aa)
Transcriptional regulator, AraC family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV70_9CLOT
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEA80088.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
AraC family transcriptional regulator
L3_101_367G1_scaffold_6_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14006..14863
DNA (858bp) protein (286aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Diaminopimelate epimerase n=2 Tax=Clostridium RepID=B6FV69_9CLOT
diaminopimelate epimerase
L3_101_367G1_scaffold_6_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15038..18442
DNA (3405bp) protein (1135aa)
ATP-dependent nuclease subunit B n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV68_9CLOT
ATP-dependent nuclease subunit B {ECO:0000313|EMBL:EEA80086.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATP-dependent nuclease subunit B
L3_101_367G1_scaffold_6_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18433..22086
DNA (3654bp) protein (1218aa)
ATP-dependent helicase/nuclease subunit A {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00044589}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00274943};; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00145970};; ATP-dependent helicase/nuclease AddA {ECO:0000256|HAMAP-Rule:MF_01451}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATP-dependent helicase/nuclease subunit A n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV67_9CLOT
recombination helicase AddA, Firmicutes type
L3_101_367G1_scaffold_6_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22089..22352
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV66_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80084.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted membrane protein
L3_101_367G1_scaffold_6_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22460..22783
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PN66_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22294.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
transcriptional regulator, PadR family
L3_101_367G1_scaffold_6_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22780..23409
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PD99_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22293.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted membrane protein
L3_101_367G1_scaffold_6_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23409..24170
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QK07_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22292.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_101_367G1_scaffold_6_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24232..24432
DNA (201bp) protein (67aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FV62_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22291.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Small, acid-soluble spore proteins, alpha/beta type.
L3_101_367G1_scaffold_6_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24525..25205
DNA (681bp) protein (227aa)
Glycosyltransferase, WecB/TagA/CpsF family {ECO:0000313|EMBL:EEA80079.1}; EC=2.4.1.- {ECO:0000313|EMBL:EEA80079.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Glycosyltransferase, WecB/TagA/CpsF family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV61_9CLOT
Teichoic acid biosynthesis proteins
L3_101_367G1_scaffold_6_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25395..26483
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV60_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80078.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
transcriptional regulator, CdaR family
L3_101_367G1_scaffold_6_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26501..27178
DNA (678bp) protein (226aa)
Cell division ATP-binding protein FtsE n=2 Tax=Clostridium RepID=B6FV59_9CLOT
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:EEA80077.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
cell division ATP-binding protein FtsE
L3_101_367G1_scaffold_6_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27178..28089
DNA (912bp) protein (304aa)
Cell division protein FtsX n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FV58_9CLOT
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
cell division protein FtsX
L3_101_367G1_scaffold_6_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28098..29228
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUU6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22286.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Membrane-bound metallopeptidase
L3_101_367G1_scaffold_6_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29245..30435
DNA (1191bp) protein (397aa)
C-terminal peptidase (prc) (EC:3.4.21.102)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFB8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22285.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_101_367G1_scaffold_6_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30525..31811
DNA (1287bp) protein (429aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Dihydroorotase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJD0_9CLOT
dihydroorotase
Displaying items 1-30 of 222 in total

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