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L3_105_000M1_scaffold_155

Search features with annotation key words

Displaying items 1-30 of 155 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_155_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..1142
DNA (1140bp) protein (380aa)
Replicative DNA helicase {ECO:0000313|EMBL:EFB76699.1}; EC=3.6.1.- {ECO:0000313|EMBL:EFB76699.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
primary replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL41_9FIRM
L3_105_000M1_scaffold_155_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1132..2523
DNA (1392bp) protein (464aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain (EC:6.3.4.-)
tRNA(Ile)-lysidine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL40_9FIRM
L3_105_000M1_scaffold_155_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2529..3080
DNA (552bp) protein (184aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EFB76697.1}; EC=2.4.2.8 {ECO:0000313|EMBL:EFB76697.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL39_9FIRM
L3_105_000M1_scaffold_155_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3131..5218
DNA (2088bp) protein (696aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL38_9FIRM
L3_105_000M1_scaffold_155_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5235..6359
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76695.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_155_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6403..7371)
DNA (969bp) protein (323aa)
Pseudouridine synthase, RluA family {ECO:0000313|EMBL:EFB76694.1}; EC=5.4.99.- {ECO:0000313|EMBL:EFB76694.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Pseudouridylate synthases, 23S RNA-specific (EC:5.4.99.12)
Pseudouridine synthase, RluA family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL36_9FIRM
L3_105_000M1_scaffold_155_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7468..8193
DNA (726bp) protein (242aa)
DNA repair protein RadC n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL34_9FIRM
DNA repair protein RadC {ECO:0000313|EMBL:EFB76693.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA repair protein RadC
L3_105_000M1_scaffold_155_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8340..10379
DNA (2040bp) protein (680aa)
UvrABC system protein B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL33_9FIRM
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Excinuclease ABC subunit B
L3_105_000M1_scaffold_155_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10376..13282
DNA (2907bp) protein (969aa)
UvrABC system protein A n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL32_9FIRM
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
uvrA; UvrABC system protein A
L3_105_000M1_scaffold_155_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13425..14351
DNA (927bp) protein (309aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Pseudouridylate synthases, 23S RNA-specific (EC:5.4.99.12)
Pseudouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM58_9FIRM
L3_105_000M1_scaffold_155_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14385..16223
DNA (1839bp) protein (613aa)
Peptidase, M23 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM57_9FIRM
Peptidase, M23 family {ECO:0000313|EMBL:EFB75642.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Membrane proteins related to metalloendopeptidases
L3_105_000M1_scaffold_155_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16407..17690
DNA (1284bp) protein (428aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM56_9FIRM
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
L3_105_000M1_scaffold_155_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17748..18536
DNA (789bp) protein (263aa)
Metallo-beta-lactamase domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM55_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EFB75640.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Metal-dependent hydrolases of the beta-lactamase superfamily I
L3_105_000M1_scaffold_155_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18550..19035
DNA (486bp) protein (162aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM54_9FIRM
hypothetical protein
L3_105_000M1_scaffold_155_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19153..20676)
DNA (1524bp) protein (508aa)
ferredoxin hydrogenase, large subunit (EC:1.12.7.2)
4Fe-4S binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM53_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EFB75638.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_155_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20875..22173)
DNA (1299bp) protein (433aa)
MiaB-like tRNA modifying enzyme (EC:1.3.1.74)
tRNA methylthiotransferase YqeV n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM52_9FIRM
tRNA methylthiotransferase YqeV {ECO:0000313|EMBL:EFB75637.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_155_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22301..23476
DNA (1176bp) protein (392aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM51_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EFB75636.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_155_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23587..24921
DNA (1335bp) protein (445aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM50_9FIRM
L3_105_000M1_scaffold_155_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24970..25374
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM49_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75634.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_105_000M1_scaffold_155_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25535..26035
DNA (501bp) protein (167aa)
Putative ACR, COG1399 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM47_9FIRM
Putative ACR, COG1399 {ECO:0000313|EMBL:EFB75632.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted metal-binding, possibly nucleic acid-binding protein
L3_105_000M1_scaffold_155_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


26060..26245
DNA (186bp) protein (62aa)
50S ribosomal protein L32 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM46_9FIRM
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_105_000M1_scaffold_155_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26311..27642
DNA (1332bp) protein (444aa)
Putative FeS-containing Cyanobacterial-specific oxidoreductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM45_9FIRM
Putative FeS-containing Cyanobacterial-specific oxidoreductase {ECO:0000313|EMBL:EFB75630.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Fe-S oxidoreductase, related to NifB/MoaA family
L3_105_000M1_scaffold_155_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27669..29012
DNA (1344bp) protein (448aa)
GTPase Der n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM44_9FIRM
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribosome-associated GTPase EngA
L3_105_000M1_scaffold_155_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29016..29693
DNA (678bp) protein (226aa)
Glycerol-3-phosphate acyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM43_9FIRM
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
conserved hypothetical integral membrane protein TIGR00023
L3_105_000M1_scaffold_155_25
Lachnospiraceae bacterium 28-4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29790..30104
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 28-4 RepID=R9JG63_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS30127.1}; TaxID=397287 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 28-4.;"
L3_105_000M1_scaffold_155_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30209..30475
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM41_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75626.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_155_27

Not on your lists

30491..30922
DNA (432bp) protein (144aa)
ATPase, F0 complex, subunit I {ECO:0000313|EMBL:EKC57048.1}; EC=3.6.3.14 {ECO:0000313|EMBL:EKC57048.1};; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
ATPase, F0 complex, subunit I n=1 Tax=human gut metagenome RepID=K1SHM0_9ZZZZ
L3_105_000M1_scaffold_155_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30919..31782
DNA (864bp) protein (288aa)
ATP synthase F0, A subunit {ECO:0000313|EMBL:EFB75624.1}; EC=3.6.3.14 {ECO:0000313|EMBL:EFB75624.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
atpB; F0 sector of membrane-bound ATP synthase, subunit a (EC:3.6.3.14)
ATP synthase F0, A subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM39_9FIRM
L3_105_000M1_scaffold_155_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31815..32054
DNA (240bp) protein (80aa)
ATP synthase F0, C subunit {ECO:0000313|EMBL:EFB75623.1}; EC=3.6.3.14 {ECO:0000313|EMBL:EFB75623.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATP synthase F0, C subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM38_9FIRM
ATP synthase F0 subunit C
L3_105_000M1_scaffold_155_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32085..32489
DNA (405bp) protein (135aa)
ATP synthase F0 subcomplex B subunit (EC:3.6.3.14)
ATP synthase subunit b n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PM37_9FIRM
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Displaying items 1-30 of 155 in total

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