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L3_105_000M1_scaffold_910

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_910_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..273
DNA (273bp) protein (91aa)
Electron transfer flavoprotein domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ76_9FIRM
Electron transfer flavoprotein domain protein {ECO:0000313|EMBL:EFB77236.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Electron transfer flavoprotein, beta subunit
L3_105_000M1_scaffold_910_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

291..1391
DNA (1101bp) protein (367aa)
Electron transfer flavoprotein FAD-binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ77_9FIRM
Electron transfer flavoprotein FAD-binding domain protein {ECO:0000313|EMBL:EFB77237.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
electron transfer protein subunit alpha
L3_105_000M1_scaffold_910_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1457..2134)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77238.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_105_000M1_scaffold_910_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2131..2685)
DNA (555bp) protein (185aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ79_9FIRM
putative 5-formyltetrahydrofolate cyclo-ligase family protein
L3_105_000M1_scaffold_910_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2884..3450
DNA (567bp) protein (189aa)
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:EFB77241.1}; EC=5.1.3.13 {ECO:0000313|EMBL:EFB77241.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ81_9FIRM
L3_105_000M1_scaffold_910_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3460..4257
DNA (798bp) protein (266aa)
ABC-2 type transporter n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ82_9FIRM
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type polysaccharide/polyol phosphate export systems, permease component
L3_105_000M1_scaffold_910_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4270..5046
DNA (777bp) protein (259aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ83_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB77243.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type polysaccharide/polyol phosphate transport system, ATPase component
L3_105_000M1_scaffold_910_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5050..6924
DNA (1875bp) protein (625aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB77244.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB77244.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ84_9FIRM
family 2 glycosyl transferase
L3_105_000M1_scaffold_910_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6938..7186
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ85_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77245.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_105_000M1_scaffold_910_10
Actinobacillus suis, Actinobacillus, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7204..7713
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Actinobacillus suis H91-0380 RepID=K0G8M3_ACTSU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU20059.1}; TaxID=696748 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus.;" source="Actinobacillus suis H91-0380.;"
L3_105_000M1_scaffold_910_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7703..9535
DNA (1833bp) protein (611aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB77246.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB77246.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ86_9FIRM
Predicted glycosyltransferases
L3_105_000M1_scaffold_910_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9745..10395)
DNA (651bp) protein (217aa)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
serine O-acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN01_9FIRM
L3_105_000M1_scaffold_910_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10868..12058
DNA (1191bp) protein (397aa)
dihydroorotase (EC:3.5.2.3)
Amidohydrolase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN00_9FIRM
Dihydroorotase {ECO:0000256|SAAS:SAAS00252556}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_105_000M1_scaffold_910_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12237..13100
DNA (864bp) protein (288aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
orotidine 5'-phosphate decarboxylase, subfamily 2 (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ9_9FIRM
L3_105_000M1_scaffold_910_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13081..13851
DNA (771bp) protein (257aa)
Dihydroorotate dehydrogenase, electron transfer subunit {ECO:0000313|EMBL:EFB75933.1}; EC=1.3.5.2 {ECO:0000313|EMBL:EFB75933.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Dihydroorotate dehydrogenase, electron transfer subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ8_9FIRM
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
L3_105_000M1_scaffold_910_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13851..14756
DNA (906bp) protein (302aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dihydroorotate oxidase B, catalytic subunit (EC:1.3.98.1)
Dihydroorotate dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ7_9FIRM
L3_105_000M1_scaffold_910_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14987..15583
DNA (597bp) protein (199aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00078102}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
orotate phosphoribosyltransferase, Thermus family (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ6_9FIRM
L3_105_000M1_scaffold_910_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15702..16832
DNA (1131bp) protein (377aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
carbamoyl-phosphate synthase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ5_9FIRM
L3_105_000M1_scaffold_910_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16825..20064
DNA (3240bp) protein (1080aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ4_9FIRM
L3_105_000M1_scaffold_910_20

Not on your lists

20207..21223
DNA (1017bp) protein (339aa)
Transcriptional regulator LacI family n=1 Tax=uncultured bacterium RepID=S6CQ19_9BACT
Transcriptional regulator LacI family {ECO:0000313|EMBL:CCG05876.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
scrR; sucrose operon repressor
L3_105_000M1_scaffold_910_21

Not on your lists

21517..22914
DNA (1398bp) protein (466aa)
PTS system glucose subfamily IIA component n=2 Tax=root RepID=S6CP87_9BACT
PTS system glucose subfamily IIA component {ECO:0000313|EMBL:CCG05877.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PTS system, glucose subfamily, IIA component
L3_105_000M1_scaffold_910_22

Not on your lists

23006..24406
DNA (1401bp) protein (467aa)
Glycoside hydrolase family 32 n=1 Tax=uncultured bacterium PF8_9BACT">RepID=S6CPF8_9BACT
Glycoside hydrolase family 32 {ECO:0000313|EMBL:CCG05878.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
sucrose-6-phosphate hydrolase
L3_105_000M1_scaffold_910_23

Not on your lists

24418..25380
DNA (963bp) protein (321aa)
Sugar kinases, ribokinase family (EC:2.7.1.4)
Putative fructokinase n=1 Tax=uncultured bacterium RepID=S6CP18_9BACT
Putative fructokinase {ECO:0000313|EMBL:CCG05879.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
L3_105_000M1_scaffold_910_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25591..25866
DNA (276bp) protein (92aa)
DNA-binding protein HU n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMZ2_9FIRM
DNA-binding protein HU {ECO:0000313|EMBL:EFB75927.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Bacterial nucleoid DNA-binding protein
L3_105_000M1_scaffold_910_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26023..27243)
DNA (1221bp) protein (407aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01978}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01978}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01978}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
6-phosphofructokinase (EC:2.7.1.11)
Phosphofructokinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP55_9FIRM
L3_105_000M1_scaffold_910_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27276..28100)
DNA (825bp) protein (275aa)
Cof-like hydrolase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP54_9FIRM
Cof-like hydrolase {ECO:0000313|EMBL:EFB75550.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
HAD-superfamily hydrolase, subfamily IIB
L3_105_000M1_scaffold_910_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28212..28973
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP53_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75549.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted membrane protein
L3_105_000M1_scaffold_910_28
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29211..29387
DNA (177bp) protein (59aa)
30S ribosomal protein S21 n=6 Tax=Faecalibacterium RepID=D4K322_9FIRM
SSU ribosomal protein S21P
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L3_105_000M1_scaffold_910_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29477..29902
DNA (426bp) protein (142aa)
HAD phosphatase, family IIIA {ECO:0000313|EMBL:EFB75547.1}; EC=3.1.3.- {ECO:0000313|EMBL:EFB75547.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
HAD phosphatase, family IIIA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP51_9FIRM
HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
L3_105_000M1_scaffold_910_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29895..30758
DNA (864bp) protein (288aa)
AP endonuclease, family 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP50_9FIRM
AP endonuclease, family 2 {ECO:0000313|EMBL:EFB75546.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
xylose isomerase domain-containing protein TIM barrel
Displaying items 1-30 of 66 in total

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