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L3_105_000M1_scaffold_1548

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_1548_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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868..2214
DNA (1347bp) protein (449aa)
Arylsulfatase {ECO:0000313|EMBL:EFB76491.1}; EC=3.1.6.- {ECO:0000313|EMBL:EFB76491.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Arylsulfatase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKI3_9FIRM
Arylsulfatase A and related enzymes
L3_105_000M1_scaffold_1548_2
Sebaldella termitidis, Sebaldella, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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2221..3333
DNA (1113bp) protein (371aa)
Radical SAM domain protein n=1 Tax=Sebaldella termitidis (strain ATCC 33386 / NCTC 11300) RepID=D1ALZ2_SEBTE
radical SAM protein
Radical SAM domain protein {ECO:0000313|EMBL:ACZ07260.1}; TaxID=526218 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Sebaldella.;" source="Sebaldella termitidis (strain ATCC 33386 / NCTC 11300).;"
L3_105_000M1_scaffold_1548_3
unknown

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3608..5299
DNA (1692bp) protein (564aa)

This feature has no annotations

L3_105_000M1_scaffold_1548_4
unknown

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comp(5899..6195)
DNA (297bp) protein (99aa)

This feature has no annotations

L3_105_000M1_scaffold_1548_5
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6394..7173
DNA (780bp) protein (260aa)
Sporulation initiation inhibitor protein Soj n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y3Y2_9FIRM
soj; Sporulation initiation inhibitor protein soj
Sporulation initiation inhibitor protein soj {ECO:0000313|EMBL:CDZ25162.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_105_000M1_scaffold_1548_6
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7170..8054
DNA (885bp) protein (295aa)
Putative stage 0 sporulation protein J n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2DBW2_9CLOT
spo0J; Stage 0 sporulation protein J
Stage 0 sporulation protein J {ECO:0000313|EMBL:CDZ25161.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_105_000M1_scaffold_1548_7
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

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8059..9357
DNA (1299bp) protein (433aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5R219_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ34708.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
L3_105_000M1_scaffold_1548_8
unknown

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9595..10224
DNA (630bp) protein (210aa)

This feature has no annotations

L3_105_000M1_scaffold_1548_9
Taeniopygia guttata, Taeniopygia, Passeriformes, Aves, Chordata, Metazoa

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comp(10370..10606)
DNA (237bp) protein (79aa)
Uncharacterized protein (Fragment) n=1 Tax=Taeniopygia guttata RepID=H0ZHT8_TAEGU
Uncharacterized protein {ECO:0000313|Ensembl:ENSTGUP00000010154}; Flags: Fragment;; TaxID=59729 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia.;" source="Taeniopygia guttata (Zebra finch) (Poephila guttata).;"
L3_105_000M1_scaffold_1548_10
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10905..11762)
DNA (858bp) protein (286aa)
rsmA; Ribosomal RNA small subunit methyltransferase A (EC:2.1.1.182)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Clostridium sp. CAG:352 RepID=R6QLT2_9CLOT
L3_105_000M1_scaffold_1548_11
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11759..12868)
DNA (1110bp) protein (370aa)
Peptide chain release factor 2 n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5Q3L5_9FIRM
prfB; Peptide chain release factor 2
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_105_000M1_scaffold_1548_12
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12945..14504)
DNA (1560bp) protein (520aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
glyQS; Glycine-tRNA ligase (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VSX5_9CLOT
L3_105_000M1_scaffold_1548_13
Firmicutes bacterium CAG:555, Firmicutes, Bacteria

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comp(14854..17523)
DNA (2670bp) protein (890aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1263030 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:555.;"
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Firmicutes bacterium CAG:555 RepID=R5D8R3_9FIRM
L3_105_000M1_scaffold_1548_14
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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comp(17536..19473)
DNA (1938bp) protein (646aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZK46_9FIRM
L3_105_000M1_scaffold_1548_15
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19856..20098)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LBI2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS55928.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein predicted by Glimmer/Critica
L3_105_000M1_scaffold_1548_16
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20125..21210)
DNA (1086bp) protein (362aa)
DNA replication and repair protein RecF n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBN6_9FIRM
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
DNA replication and repair protein RecF
L3_105_000M1_scaffold_1548_17
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21212..22318)
DNA (1107bp) protein (369aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Eubacterium sp. CAG:202 RepID=R6N0B9_9FIRM
L3_105_000M1_scaffold_1548_18
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23089..24342)
DNA (1254bp) protein (418aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LJK5_9FIRM
dnaA; Chromosomal replication initiator protein DnaA
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Displaying 18 items

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