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L3_105_000M1_scaffold_750

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_750_1
Listeria rocourtiae, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

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1..714
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RUG9_9FIRM
LicD family protein {ECO:0000313|EMBL:EUJ47612.1}; TaxID=1265846 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria rocourtiae FSL F6-920.;"
LicD family protein
L3_105_000M1_scaffold_750_2
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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701..1114
DNA (414bp) protein (138aa)
Cytidyltransferase-related domain protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UIQ2_RUMA7
cytidyltransferase-like domain-containing protein
Cytidyltransferase-related domain protein {ECO:0000313|EMBL:ADU21354.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L3_105_000M1_scaffold_750_3
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1131..2288
DNA (1158bp) protein (386aa)
Coenzyme F420-reducing hydrogenase, beta subunit n=2 Tax=Clostridium saccharoperbutylacetonicum RepID=M1LQ19_9CLOT
coenzyme F420-reducing hydrogenase, beta subunit
Coenzyme F420-reducing hydrogenase, beta subunit {ECO:0000313|EMBL:AGF54980.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_105_000M1_scaffold_750_4
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2556..3608
DNA (1053bp) protein (351aa)
UDP-glucose 4-epimerase (EC:5.1.3.2)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EXF6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE06137.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
L3_105_000M1_scaffold_750_5
Catonella morbi, Catonella, Clostridiales, Clostridia, Firmicutes, Bacteria

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3605..4858
DNA (1254bp) protein (418aa)
NAD dependent epimerase/dehydratase family protein n=1 Tax=Catonella morbi ATCC 51271 RepID=V2XNN4_9FIRM
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:ESL03779.1}; TaxID=592026 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Catonella.;" source="Catonella morbi ATCC 51271.;"
Nucleoside-diphosphate-sugar epimerases
L3_105_000M1_scaffold_750_6
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4842..6029
DNA (1188bp) protein (396aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7ET65_9FIRM
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:CDE06139.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
L3_105_000M1_scaffold_750_7
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

comp(6428..7462)
DNA (1035bp) protein (345aa)
ABC-type metal ion transport system periplasmic component/surface adhesin n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AD24_9FIRM
ABC-type metal ion transport system periplasmic component/surface adhesin {ECO:0000313|EMBL:CCX41090.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
periplasmic solute binding protein
L3_105_000M1_scaffold_750_8
Paenibacillus sp. FSL H8-237, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8158..9132
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=Caldibacillus debilis RepID=UPI00036C6A65
Uncharacterized protein {ECO:0000313|EMBL:ETT67886.1}; TaxID=1227350 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H8-237.;"
membrane protein
L3_105_000M1_scaffold_750_9
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9691..11439
DNA (1749bp) protein (583aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6P3V7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC13166.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
multidrug ABC transporter ATPase and permease
L3_105_000M1_scaffold_750_10
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11432..13327
DNA (1896bp) protein (632aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6PTR1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC13167.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
ABC transporter
L3_105_000M1_scaffold_750_11
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13924..14838)
DNA (915bp) protein (305aa)
Glycoside hydrolase family 1 n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RBT6_DESPD
glycoside hydrolase family 1
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
L3_105_000M1_scaffold_750_12
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15164..16633
DNA (1470bp) protein (490aa)
guaB; Inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KFJ4_9FIRM
L3_105_000M1_scaffold_750_13
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17122..18414
DNA (1293bp) protein (431aa)
Recombination factor protein RarA n=1 Tax=Ruminococcus albus 8 RepID=E9SEP0_RUMAL
Recombination factor protein RarA {ECO:0000313|EMBL:EGC02293.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
yrvN; putative AAA domain-containing protein YrvN
L3_105_000M1_scaffold_750_14
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18417..19118
DNA (702bp) protein (234aa)
endonuclease III (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
Endonuclease III n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MHV3_9FIRM
L3_105_000M1_scaffold_750_15
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19088..20278
DNA (1191bp) protein (397aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
ribosomal protein L11 methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7T1_9FIRM
L3_105_000M1_scaffold_750_16
unknown

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20275..20628
DNA (354bp) protein (118aa)

This feature has no annotations

L3_105_000M1_scaffold_750_17
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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21208..24075
DNA (2868bp) protein (956aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9VHP4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY90165.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
Calcineurin-like phosphoesterase
L3_105_000M1_scaffold_750_18
Clostridium sp. CAG:354, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24488..25078)
DNA (591bp) protein (197aa)
DNA polymerase III PolC-type (PolIII) (EC:2.7.7.7)
DNA polymerase III epsilon subunit family protein n=1 Tax=Clostridium sp. CAG:354 RepID=R7F8R6_9CLOT
DNA polymerase III epsilon subunit family protein {ECO:0000313|EMBL:CDE10117.1}; TaxID=1262799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:354.;"
L3_105_000M1_scaffold_750_19
Mycoplasma sp. CAG:956, Mycoplasma, Mycoplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(25095..25787)
DNA (693bp) protein (231aa)
Carbohydrate esterase family 1 Est1D n=1 Tax=Mycoplasma sp. CAG:956 RepID=R5M8M8_9MOLU
Carbohydrate esterase family 1 Est1D {ECO:0000313|EMBL:CCY87928.1}; TaxID=1262908 species="Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma; environmental samples.;" source="Mycoplasma sp. CAG:956.;"
est1D; carbohydrate esterase 1 Est1D
L3_105_000M1_scaffold_750_20
Firmicutes bacterium CAG:822, Firmicutes, Bacteria

Not on your lists

comp(25814..27139)
DNA (1326bp) protein (442aa)
Recombination protein MgsA n=1 Tax=Firmicutes bacterium CAG:822 RepID=R5IWJ8_9FIRM
Recombination protein MgsA {ECO:0000313|EMBL:CCY46663.1}; TaxID=1263032 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:822.;"
recombination factor protein RarA
L3_105_000M1_scaffold_750_21
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(27967..28308)
DNA (342bp) protein (114aa)
50S ribosomal protein L17 n=1 Tax=Eubacterium sp. CAG:251 RepID=R6Q5Z3_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
50S ribosomal protein L17
L3_105_000M1_scaffold_750_22
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28327..29280)
DNA (954bp) protein (318aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E8L5_9CLOT
L3_105_000M1_scaffold_750_23
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(29368..30000)
DNA (633bp) protein (211aa)
30S ribosomal protein S4 n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M769_9FIRM
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
30S ribosomal protein S4
L3_105_000M1_scaffold_750_24
Firmicutes bacterium CAG:137, Firmicutes, Bacteria

Not on your lists


comp(30018..30416)
DNA (399bp) protein (133aa)
30S ribosomal protein S11 n=1 Tax=Firmicutes bacterium CAG:137 RepID=R6GV96_9FIRM
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1263004 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:137.;"
30S ribosomal protein S11
L3_105_000M1_scaffold_750_25
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(30433..30801)
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MCN7_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
rpsM; 30S ribosomal protein S13
L3_105_000M1_scaffold_750_26
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30825..30938)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=5 Tax=root RepID=D4JX80_9FIRM
LSU ribosomal protein L36P
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L3_105_000M1_scaffold_750_27
Thermoanaerobacter kivui, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30983..31213)
DNA (231bp) protein (77aa)
Translation initiation factor IF-1 n=6 Tax=Thermoanaerobacter RepID=D3T4N2_THEIA
infA; translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=2325 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter kivui (Acetogenium kivui).;"
L3_105_000M1_scaffold_750_28
Thermobrachium celere, Thermobrachium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(31215..31496)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Thermobrachium celere DSM 8682 RepID=R7RU86_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF58865.1}; TaxID=941824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Thermobrachium.;" source="Thermobrachium celere DSM 8682.;"
50S ribosomal protein L14
L3_105_000M1_scaffold_750_29
Eubacterium sp. CAG:251, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31586..32335)
DNA (750bp) protein (250aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1262886 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:251.;"
map; Methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Eubacterium sp. CAG:251 RepID=R6Q8L6_9FIRM
L3_105_000M1_scaffold_750_30
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32335..32988)
DNA (654bp) protein (218aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
adk; Adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Clostridium sp. MSTE9 RepID=J0MWW6_9CLOT
Displaying items 1-30 of 62 in total

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