ggKbase home page

L3_105_000M1_scaffold_679

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_679_1
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..2866
DNA (2865bp) protein (955aa)
Ig-like domain-containing surface protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6PQ08_9CLOT
Ig-like domain-containing surface protein {ECO:0000313|EMBL:CDC11887.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
Ig-like domain-containing surface protein
L3_105_000M1_scaffold_679_2
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3017..4387)
DNA (1371bp) protein (457aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NKZ1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC11885.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
efflux protein
L3_105_000M1_scaffold_679_3
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4615..5205
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NI97_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC11883.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
hypothetical protein
L3_105_000M1_scaffold_679_4
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5195..5917
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6P030_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC11881.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
ABC transporter ATPase
L3_105_000M1_scaffold_679_5
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5917..6648
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NKY6_9CLOT
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
ABC transporter permease
L3_105_000M1_scaffold_679_6
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7425..8903
DNA (1479bp) protein (493aa)
arfB; alpha-L-arabinofuranosidase ArfB (EC:3.2.1.55)
Alpha-L-arabinofuranosidase domain protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NU18_9CLOT
Alpha-L-arabinofuranosidase domain protein {ECO:0000313|EMBL:CDC11869.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
L3_105_000M1_scaffold_679_7
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8900..9151
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NI84_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC11868.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
hypothetical protein
L3_105_000M1_scaffold_679_8
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9182..9880
DNA (699bp) protein (233aa)
Two-component response regulator n=1 Tax=Clostridium sp. CAG:413 RepID=R6PPY6_9CLOT
Two-component response regulator {ECO:0000313|EMBL:CDC11867.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
response regulator
L3_105_000M1_scaffold_679_9
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9898..11877
DNA (1980bp) protein (660aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6P018_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC11866.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
histidine kinase
L3_105_000M1_scaffold_679_10
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11896..12762
DNA (867bp) protein (289aa)
SCP-like extracellular n=1 Tax=Clostridium sp. CAG:413 RepID=R6NKX3_9CLOT
SCP-like extracellular {ECO:0000313|EMBL:CDC11865.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
ykwD; hypothetical protein
L3_105_000M1_scaffold_679_11
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12762..12950
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NU13_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC11864.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
hypothetical protein
L3_105_000M1_scaffold_679_12
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12963..14033
DNA (1071bp) protein (357aa)
Peptide chain release factor 1 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NI79_9CLOT
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
bacterial peptide chain release factor 1 (bRF-1)
L3_105_000M1_scaffold_679_13
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14044..15633
DNA (1590bp) protein (530aa)
coaE; dephospho-CoA kinase (EC:2.7.1.24)
tRNA threonylcarbamoyl adenosine modification protein Sua5/YciO/YrdC/YwlC family n=1 Tax=Clostridium sp. CAG:413 RepID=R6PPY0_9CLOT
tRNA threonylcarbamoyl adenosine modification protein Sua5/YciO/YrdC/YwlC family {ECO:0000313|EMBL:CDC11862.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
L3_105_000M1_scaffold_679_14
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15646..16206
DNA (561bp) protein (187aa)
Transglycosylase SLT domain protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6P012_9CLOT
Transglycosylase SLT domain protein {ECO:0000313|EMBL:CDC11861.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
Lytic transglycosylase catalytic
L3_105_000M1_scaffold_679_15
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16223..17623
DNA (1401bp) protein (467aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
apeA; putative M18 family aminopeptidase 1 (EC:3.4.11.-)
M18 family aminopeptidase n=1 Tax=Clostridium sp. CAG:413 RepID=R6NKW8_9CLOT
L3_105_000M1_scaffold_679_16
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17895..18950
DNA (1056bp) protein (352aa)
yqhT; putative peptidase YqhT (EC:3.4.-.-)
Metallopeptidase family M24 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NU05_9CLOT
Metallopeptidase family M24 {ECO:0000313|EMBL:CDC11859.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
L3_105_000M1_scaffold_679_17
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19047..19604
DNA (558bp) protein (186aa)
Elongation factor P n=1 Tax=Clostridium sp. CAG:413 RepID=R6NI73_9CLOT
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
translation elongation factor P (EF-P)
L3_105_000M1_scaffold_679_18
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19644..20081
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6PPX5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC11857.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
hypothetical protein
L3_105_000M1_scaffold_679_19
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20465..21349)
DNA (885bp) protein (295aa)
yngB; putative UTP-glucose-1-phosphate uridylyltransferase YngB (EC:2.7.7.9)
UTP-glucose-1-phosphate uridylyltransferase n=1 Tax=Clostridium sp. CAG:413 RepID=R6P007_9CLOT
UTP-glucose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:CDC11856.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
L3_105_000M1_scaffold_679_20
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21398..22465)
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NKW4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC11855.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
hypothetical protein predicted by Glimmer/Critica
L3_105_000M1_scaffold_679_21
unknown

Not on your lists

comp(22515..22862)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Coprococcus eutactus CAG:665 RepID=R5VPP5_9FIRM
L3_105_000M1_scaffold_679_22
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23189..24298
DNA (1110bp) protein (370aa)
Peptide chain release factor 2 n=1 Tax=Clostridium sp. CAG:413 RepID=R6NI69_9CLOT
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
prfB; Peptide chain release factor 2
L3_105_000M1_scaffold_679_23
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24317..24922
DNA (606bp) protein (202aa)
Putative cyclase n=1 Tax=Clostridium sp. CAG:413 RepID=R6PPX0_9CLOT
Putative cyclase {ECO:0000313|EMBL:CDC11852.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
Predicted metal-dependent hydrolase
L3_105_000M1_scaffold_679_24
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24938..25528
DNA (591bp) protein (197aa)
UDP-phosphate galactose phosphotransferase (EC:2.7.8.6)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6P001_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC11851.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
L3_105_000M1_scaffold_679_25
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25525..26388)
DNA (864bp) protein (288aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium sp. CAG:413 RepID=R6NKW0_9CLOT
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:CDC11850.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
L3_105_000M1_scaffold_679_26
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26520..27800
DNA (1281bp) protein (427aa)
Aminopeptidase putative n=1 Tax=Clostridium sp. CAG:413 RepID=R6PPW0_9CLOT
Aminopeptidase putative {ECO:0000313|EMBL:CDC11842.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
L3_105_000M1_scaffold_679_27
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27969..28853
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NKU9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC11840.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
L3_105_000M1_scaffold_679_28
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28902..31187)
DNA (2286bp) protein (762aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NI54_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC11838.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
alpha-rhamnosidase
L3_105_000M1_scaffold_679_29
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31311..32195
DNA (885bp) protein (295aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
tRNA pseudouridine synthase B n=1 Tax=Clostridium sp. CAG:413 RepID=R6NZY6_9CLOT
tRNA pseudouridine synthase B
L3_105_000M1_scaffold_679_30
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32260..32790
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NTX4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC11834.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
hypothetical protein
Displaying items 1-30 of 40 in total

View Taxonomy