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L3_105_000M1_scaffold_56

Search features with annotation key words

Displaying items 1-30 of 273 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_56_1
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(421..1512)
DNA (1092bp) protein (364aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MMW2_9FIRM
L3_105_000M1_scaffold_56_2
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1493..3820)
DNA (2328bp) protein (776aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-dehydroquinate synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFZ9_9CLOT
L3_105_000M1_scaffold_56_3
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3896..4909)
DNA (1014bp) protein (338aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
3-deoxy-7-phosphoheptulonate synthase n=2 Tax=Clostridium RepID=A7VYR8_9CLOT
3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:CDC03406.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
L3_105_000M1_scaffold_56_4
Subdoligranulum sp. CAG:314, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5528..5779
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI00037C4510
HfsA {ECO:0000313|EMBL:CDE70834.1}; TaxID=1262970 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum; environmental samples.;" source="Subdoligranulum sp. CAG:314.;"
NADH:ubiquinone oxidoreductase 24 kD subunit
L3_105_000M1_scaffold_56_5
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5861..7552
DNA (1692bp) protein (564aa)
PAS domain S-box protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2F6A2_CLOS4
PAS domain S-box protein {ECO:0000313|EMBL:ERJ00782.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
PAS domain-containing protein
L3_105_000M1_scaffold_56_6
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7608..8780
DNA (1173bp) protein (391aa)
Stage II sporulation protein E n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2F0Z9_CLOS4
Stage II sporulation protein E {ECO:0000313|EMBL:ERJ00783.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
protein serine/threonine phosphatase
L3_105_000M1_scaffold_56_7
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

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comp(8785..9288)
DNA (504bp) protein (168aa)
amidase n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035E991D
amidase domain-containing protein
Tax=GWF2_Clostridiales_36_10_curated
L3_105_000M1_scaffold_56_8
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9437..9883
DNA (447bp) protein (149aa)
UPF0178 protein BN680_00349 n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XXE3_9FIRM
UPF0178 protein BN680_00349 {ECO:0000256|HAMAP-Rule:MF_00489}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
hypothetical protein
L3_105_000M1_scaffold_56_9
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(10023..10904)
DNA (882bp) protein (294aa)
Transcriptional regulator, AraC family n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A0Z2_MAHA5
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AEE98069.1}; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
L3_105_000M1_scaffold_56_10
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11158..12279
DNA (1122bp) protein (374aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0Z405_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB91118.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L3_105_000M1_scaffold_56_11
Desulfosporosinus sp. Tol-M, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12534..13853
DNA (1320bp) protein (440aa)
Glutamine synthetase beta-grasp domain protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6NCU5_9CLOT
Glutamine synthetase {ECO:0000313|EMBL:KGP76693.1}; TaxID=1536651 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. Tol-M.;"
glutamine synthetase, type I
L3_105_000M1_scaffold_56_12
Desulfosporosinus sp. Tol-M, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13898..14467
DNA (570bp) protein (190aa)
ANTAR domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAG4_9CLOT
Response regulator receiver protein {ECO:0000313|EMBL:KGP76694.1}; TaxID=1536651 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. Tol-M.;"
ANTAR domain-containing protein
L3_105_000M1_scaffold_56_13
Clostridium sp. CAG:1000, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14544..16337)
DNA (1794bp) protein (598aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1000 RepID=R5A9T7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX36076.1}; TaxID=1262768 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1000.;"
L3_105_000M1_scaffold_56_14
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16434..17414)
DNA (981bp) protein (327aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
ldh; L-lactate dehydrogenase (EC:1.1.1.27)
L-lactate dehydrogenase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A6J0_9CLOT
L3_105_000M1_scaffold_56_15
Desulfosporosinus sp. Tol-M, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17600..19873)
DNA (2274bp) protein (758aa)
glnA3-2; Type-3 glutamine synthetase (EC:6.3.1.2)
Putative molybdenum cofactor biosynthesis protein C n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQT2_9CLOT
Glutamine synthetase {ECO:0000313|EMBL:KGP76688.1}; TaxID=1536651 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. Tol-M.;"
L3_105_000M1_scaffold_56_16
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20054..21283
DNA (1230bp) protein (410aa)
Class II glutamine amidotransferase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAH0_9CLOT
Class II glutamine amidotransferase {ECO:0000313|EMBL:EEG31515.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
glutamine amidotransferase
L3_105_000M1_scaffold_56_17
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21283..22788
DNA (1506bp) protein (502aa)
Glutamate synthase (NADPH) (EC:1.4.1.13)
4Fe-4S binding domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAG9_9CLOT
4Fe-4S binding domain protein {ECO:0000313|EMBL:EEG31514.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
L3_105_000M1_scaffold_56_18
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22801..23226
DNA (426bp) protein (142aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6MW95_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDZ23922.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_105_000M1_scaffold_56_19
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23232..24461
DNA (1230bp) protein (410aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAG7_9CLOT
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EEG31512.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_105_000M1_scaffold_56_20
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24488..25222
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAG6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG31511.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
putative protein MJ1350
L3_105_000M1_scaffold_56_21
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25457..26542
DNA (1086bp) protein (362aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
carbamoyl-phosphate synthase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Eubacterium sp. CAG:202 RepID=R6MSB9_9FIRM
L3_105_000M1_scaffold_56_22
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26610..27449
DNA (840bp) protein (280aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large subunit n=1 Tax=Clostridium sp. CAG:964 RepID=R6U9S8_9CLOT
L3_105_000M1_scaffold_56_23
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27603..29213
DNA (1611bp) protein (537aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
CTP synthase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQR9_9CLOT
CTP synthase
L3_105_000M1_scaffold_56_24
Fusobacterium sp. CAG:815, Melainabacteria, Bacteria

Not on your lists

29267..30448
DNA (1182bp) protein (394aa)
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=1 Tax=Fusobacterium sp. CAG:815 RepID=R7LW72_9FUSO
LL-diaminopimelate aminotransferase {ECO:0000313|EMBL:CDE92740.1}; TaxID=1262901 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium; environmental samples.;" source="Fusobacterium sp. CAG:815.;"
L3_105_000M1_scaffold_56_25
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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30858..31943
DNA (1086bp) protein (362aa)
Glycosyl transferase group 1 n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L294_9FIRM
Glycosyl transferase group 1 {ECO:0000313|EMBL:CCY73260.1}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
Glycosyltransferase
L3_105_000M1_scaffold_56_26
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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31888..32973
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EEZ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG29900.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_105_000M1_scaffold_56_27
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33010..33861)
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LI24_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS58365.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
cell envelope-related function transcriptional attenuator common domain-containing protein
L3_105_000M1_scaffold_56_28
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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34092..34715
DNA (624bp) protein (208aa)
TrkA protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2EYH9_CLOS4
TrkA protein {ECO:0000313|EMBL:ERI99902.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
K+ transport system, NAD-binding component
L3_105_000M1_scaffold_56_29
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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34836..35510
DNA (675bp) protein (225aa)
TrkA N-terminal domain protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CN49_9CLOT
TrkA N-terminal domain protein {ECO:0000313|EMBL:CDA78123.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
K+ transport systems, NAD-binding component
L3_105_000M1_scaffold_56_30
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

comp(35592..38222)
DNA (2631bp) protein (877aa)
pyruvate, phosphate dikinase (EC:2.7.9.1)
Pyruvate phosphate dikinase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D0C4_9FIRM
Pyruvate phosphate dikinase {ECO:0000313|EMBL:CCX73640.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
Displaying items 1-30 of 273 in total

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