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L3_105_000M1_scaffold_56

Search features with annotation key words

Displaying items 121-150 of 273 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_56_121
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(130710..131471)
DNA (762bp) protein (254aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.- 5.4.99.12)
Pseudouridine synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFL9_9CLOT
L3_105_000M1_scaffold_56_122
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(131565..132746)
DNA (1182bp) protein (394aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFM0_9CLOT
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EEG29649.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
L3_105_000M1_scaffold_56_123
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(132977..133399)
DNA (423bp) protein (141aa)
Sporulation protein YtfJ n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFM1_9CLOT
Sporulation protein YtfJ {ECO:0000313|EMBL:EEG29650.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
sporulation protein YtfJ
L3_105_000M1_scaffold_56_124
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(133439..134200)
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LCY7_RUMC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL17482.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L3_105_000M1_scaffold_56_125
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(134237..134836)
DNA (600bp) protein (200aa)
Segregation and condensation protein B n=1 Tax=Clostridium sp. CAG:557 RepID=R6GII9_9CLOT
hypothetical protein
Segregation and condensation protein B {ECO:0000256|HAMAP-Rule:MF_01804, ECO:0000256|SAAS:SAAS00086417}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_105_000M1_scaffold_56_126
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(134864..135577)
DNA (714bp) protein (238aa)
ScpA/B protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFM4_9CLOT
ScpA/B protein {ECO:0000313|EMBL:EEG29653.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
chromosome segregation and condensation protein ScpA
L3_105_000M1_scaffold_56_127
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(135648..136337)
DNA (690bp) protein (230aa)
peptidase, M50 family (EC:3.4.24.-)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LMY8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS59691.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
L3_105_000M1_scaffold_56_128
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


136636..136824
DNA (189bp) protein (63aa)
50S ribosomal protein L28 n=1 Tax=Clostridium sp. CAG:242 RepID=R6CNE2_9CLOT
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
rpmB; ribosomal protein L28
L3_105_000M1_scaffold_56_129
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(136921..137931)
DNA (1011bp) protein (337aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
gpsA; Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFM7_9CLOT
L3_105_000M1_scaffold_56_130
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(137965..138624)
DNA (660bp) protein (220aa)
plsY; putative glycerol-3-phosphate acyltransferase PlsY (together with PlsX) (EC:2.3.1.15)
Glycerol-3-phosphate acyltransferase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFM9_9CLOT
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
L3_105_000M1_scaffold_56_131
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(138730..140052)
DNA (1323bp) protein (441aa)
GTPase Der n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFN0_9CLOT
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
ribosome-associated GTPase EngA
L3_105_000M1_scaffold_56_132
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(140088..141452)
DNA (1365bp) protein (455aa)
Putative FeS-containing Cyanobacterial-specific oxidoreductase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFN1_9CLOT
Putative FeS-containing Cyanobacterial-specific oxidoreductase {ECO:0000313|EMBL:EEG29660.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_105_000M1_scaffold_56_133
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(141496..141678)
DNA (183bp) protein (61aa)
50S ribosomal protein L32 n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFN2_9CLOT
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
50S ribosomal protein L32
L3_105_000M1_scaffold_56_134
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(141714..142214)
DNA (501bp) protein (167aa)
Putative ACR, COG1399 n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFN3_9CLOT
Putative ACR, COG1399 {ECO:0000313|EMBL:EEG29662.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_105_000M1_scaffold_56_135
Tannerella sp. 6_1_58FAA_CT1, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(142392..143288)
DNA (897bp) protein (299aa)
Diaminopimelate dehydrogenase n=1 Tax=Tannerella sp. 6_1_58FAA_CT1 RepID=G9S1Y1_9PORP
Diaminopimelate dehydrogenase {ECO:0000313|EMBL:EHL87991.1}; TaxID=665949 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella.;" source="Tannerella sp. 6_1_58FAA_CT1.;"
putative oxidoreductase
L3_105_000M1_scaffold_56_136
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(143649..144056)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PFX2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS09560.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L3_105_000M1_scaffold_56_137
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(144172..145509)
DNA (1338bp) protein (446aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MHN2_9FIRM
L3_105_000M1_scaffold_56_138
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(145947..147110)
DNA (1164bp) protein (388aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFN6_9CLOT
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EEG29665.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
L3_105_000M1_scaffold_56_139
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

148079..148258
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIG6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG28762.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
L3_105_000M1_scaffold_56_140
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

148348..148692
DNA (345bp) protein (115aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=7 Tax=Clostridium thermocellum RepID=A3DDS2_CLOTH
4Fe-4S ferredoxin
4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:ABN52101.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_105_000M1_scaffold_56_141
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

148689..149759
DNA (1071bp) protein (357aa)
Pyruvate flavodoxin/ferredoxin oxidoreductase thiamine diP-binding domain protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6XWT1_9FIRM
Pyruvate flavodoxin/ferredoxin oxidoreductase thiamine diP-binding domain protein {ECO:0000313|EMBL:CDD28203.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
L3_105_000M1_scaffold_56_142
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

149767..150501
DNA (735bp) protein (245aa)
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EB74_9CLOT
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein {ECO:0000313|EMBL:EEG31294.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
2-oxoglutarate oxidoreductase
L3_105_000M1_scaffold_56_143
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

150520..151056
DNA (537bp) protein (179aa)
2-oxoglutarate ferredoxin oxidoreductase, gamma subunit (EC:1.2.7.3)
2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PD62_9FIRM
2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit {ECO:0000313|EMBL:EDS10414.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L3_105_000M1_scaffold_56_144
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

151072..151422
DNA (351bp) protein (117aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2RGI3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK67941.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
L3_105_000M1_scaffold_56_145
Acidiphilium sp. CAG:727, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(151674..152960)
DNA (1287bp) protein (429aa)
Major facilitator superfamily MFS_1 n=1 Tax=Acidiphilium sp. CAG:727 RepID=R7G3V4_9PROT
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CDE22114.1}; TaxID=1262689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples.;" source="Acidiphilium sp. CAG:727.;"
hypothetical protein
L3_105_000M1_scaffold_56_146
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(152986..153750)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KGP4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN33818.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
type I phosphodiesterase/nucleotide pyrophosphatase
L3_105_000M1_scaffold_56_147
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

Not on your lists

comp(153750..154523)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5HEL1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY23181.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
Transcriptional regulators of sugar metabolism
L3_105_000M1_scaffold_56_148
Lachnospiraceae bacterium JC7, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(154934..155416)
DNA (483bp) protein (161aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00818}; TaxID=1165092 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium JC7.;"
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Clostridium sp. CAG:127 RepID=R5NUE0_9CLOT
hypothetical protein
L3_105_000M1_scaffold_56_149
Butyrivibrio sp. CAG:318, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(155420..156100)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Butyrivibrio sp. CAG:318 RepID=R6QUL5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC40338.1}; TaxID=1262761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio sp. CAG:318.;"
hypothetical protein
L3_105_000M1_scaffold_56_150
unknown

Not on your lists

comp(156334..156642)
DNA (309bp) protein (103aa)

This feature has no annotations

Displaying items 121-150 of 273 in total

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