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L3_105_000M1_scaffold_833

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_105_000M1_scaffold_833_1
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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578..1186
DNA (609bp) protein (203aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Clostridium sp. CAG:352 RepID=R6QWA6_9CLOT
L3_105_000M1_scaffold_833_2
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1217..4678
DNA (3462bp) protein (1154aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
transcription-repair coupling factor (EC:3.6.1.-)
Transcription-repair-coupling factor n=1 Tax=Clostridium sp. CAG:352 RepID=R6R6G6_9CLOT
L3_105_000M1_scaffold_833_3
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4718..5179
DNA (462bp) protein (154aa)
pH domain protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QYN6_9CLOT
pH domain protein {ECO:0000313|EMBL:CDC40925.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
membrane-flanked domain-containing protein
L3_105_000M1_scaffold_833_4
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5160..6599
DNA (1440bp) protein (480aa)
pH domain protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6RDC7_9CLOT
pH domain protein {ECO:0000313|EMBL:CDC40926.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_105_000M1_scaffold_833_5
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7019..7528
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6S2S6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC40927.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_105_000M1_scaffold_833_6
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7738..8505
DNA (768bp) protein (256aa)
Purine or other phosphorylase family 1 n=1 Tax=Clostridium sp. CAG:352 RepID=R6QWB6_9CLOT
Purine or other phosphorylase family 1 {ECO:0000313|EMBL:CDC40928.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
purine or other phosphorylase family 1
L3_105_000M1_scaffold_833_7
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8508..9203
DNA (696bp) protein (232aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (EC:3.2.2.9)
MTA/SAH nucleosidase n=1 Tax=Clostridium sp. CAG:352 RepID=R6R6G7_9CLOT
L3_105_000M1_scaffold_833_8
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9280..9837
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QYP3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC40930.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_105_000M1_scaffold_833_9
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9975..10193)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6RDD2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC40931.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
helix-turn-helix family protein
L3_105_000M1_scaffold_833_10
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10193..10498)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6S2T1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC40932.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
L3_105_000M1_scaffold_833_11
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11035..11268)
DNA (234bp) protein (78aa)
UPF0109 protein BN621_01818 n=1 Tax=Clostridium sp. CAG:352 RepID=R6QWC3_9CLOT
UPF0109 protein BN621_01818 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
RNA-binding protein (KH domain)
L3_105_000M1_scaffold_833_12
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11285..11527)
DNA (243bp) protein (81aa)
30S ribosomal protein S16 n=1 Tax=Clostridium sp. CAG:352 RepID=R6R6G8_9CLOT
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
rpsP; ribosomal protein S16
L3_105_000M1_scaffold_833_13
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11617..13008)
DNA (1392bp) protein (464aa)
Signal recognition particle protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QYP8_9CLOT
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
signal recognition particle subunit FFH/SRP54 (srp54)
L3_105_000M1_scaffold_833_14
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13026..13397)
DNA (372bp) protein (124aa)
Transcriptional regulator YlxM/p13 family n=1 Tax=Clostridium sp. CAG:352 RepID=R6RDD6_9CLOT
UPF0122 protein BN621_01821 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
helix-turn-helix protein YlxM/p13 family protein
L3_105_000M1_scaffold_833_15
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13638..14651
DNA (1014bp) protein (338aa)
PhoH family protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6S2T7_9CLOT
PhoH family protein {ECO:0000313|EMBL:CDC40937.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Phosphate starvation-inducible protein PhoH, predicted ATPase
L3_105_000M1_scaffold_833_16
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14638..15144
DNA (507bp) protein (169aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Endoribonuclease YbeY n=1 Tax=Clostridium sp. CAG:352 RepID=R6QWC9_9CLOT
conserved hypothetical protein TIGR00043
L3_105_000M1_scaffold_833_17
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15141..15623
DNA (483bp) protein (161aa)
Prokaryotic diacylglycerol kinase n=1 Tax=Clostridium sp. CAG:352 RepID=R6R6G9_9CLOT
Prokaryotic diacylglycerol kinase {ECO:0000313|EMBL:CDC40939.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
diacylglycerol kinase
L3_105_000M1_scaffold_833_18
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15666..16613
DNA (948bp) protein (316aa)
GTPase Era n=1 Tax=Clostridium sp. CAG:352 RepID=R6QYQ5_9CLOT
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
GTP-binding protein Era
L3_105_000M1_scaffold_833_19
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16961..17134
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6RDE0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC40941.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_105_000M1_scaffold_833_20
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17076..17819
DNA (744bp) protein (248aa)
DNA repair protein RecO n=1 Tax=Clostridium sp. CAG:352 RepID=R6S2U2_9CLOT
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
DNA repair protein RecO
L3_105_000M1_scaffold_833_21
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17861..20218
DNA (2358bp) protein (786aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Endonuclease MutS2 n=1 Tax=Clostridium sp. CAG:352 RepID=R6QWD6_9CLOT
MutS2 family protein
L3_105_000M1_scaffold_833_22
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20504..21436
DNA (933bp) protein (311aa)
Putative peptidase M56 BlaR1 n=1 Tax=Clostridium sp. CAG:352 RepID=R6R6H2_9CLOT
Putative peptidase M56 BlaR1 {ECO:0000313|EMBL:CDC40944.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_105_000M1_scaffold_833_23
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21451..22233
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QYQ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC40945.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
L3_105_000M1_scaffold_833_24
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22494..26048
DNA (3555bp) protein (1185aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Pyruvate-flavodoxin oxidoreductase n=1 Tax=Clostridium sp. CAG:352 RepID=R6RDE5_9CLOT
pyruvate ferredoxin/flavodoxin oxidoreductase
L3_105_000M1_scaffold_833_25
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26187..26858
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6S2V0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC40947.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
L3_105_000M1_scaffold_833_26
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27001..27132
DNA (132bp) protein (44aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QWE4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC40948.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_105_000M1_scaffold_833_27
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27962..29317)
DNA (1356bp) protein (452aa)
ABC-type Fe3+-hydroxamate transport system periplasmic component n=1 Tax=Clostridium sp. CAG:352 RepID=R6R6H5_9CLOT
ABC-type Fe3+-hydroxamate transport system periplasmic component {ECO:0000313|EMBL:CDC40949.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
ABC-type Fe3+-hydroxamate transport system, periplasmic component
L3_105_000M1_scaffold_833_28
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29342..30682)
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QYR6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC40950.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Predicted ATPase (AAA+ superfamily)
L3_105_000M1_scaffold_833_29
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31044..31628)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6RDE9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC40951.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_105_000M1_scaffold_833_30
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31825..32973
DNA (1149bp) protein (383aa)
Stage II sporulation protein P n=1 Tax=Clostridium sp. CAG:352 RepID=R6S2V5_9CLOT
Stage II sporulation protein P {ECO:0000313|EMBL:CDC40952.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
stage II sporulation protein P
Displaying items 1-30 of 36 in total

View Taxonomy