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L3_114_000M1_scaffold_472

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Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_472_1

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comp(1..480)
DNA (480bp) protein (160aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein domain n=1 Tax=Eubacterium sp. 14-2 RepID=S0IVC7_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61733.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
oligopeptide/dipeptide ABC transporter ATPase
L3_114_000M1_scaffold_472_2

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comp(500..2041)
DNA (1542bp) protein (514aa)
Putative uncharacterized protein n=3 Tax=unclassified sequences RepID=D9ZEI9_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61734.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
binding-protein-dependent transport system inner membrane protein
L3_114_000M1_scaffold_472_3

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comp(2062..3048)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0JC01_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61735.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
binding-protein-dependent transport system inner membrane protein
L3_114_000M1_scaffold_472_4

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comp(3368..5665)
DNA (2298bp) protein (766aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEH2_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61736.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
extracellular solute-binding protein
L3_114_000M1_scaffold_472_5

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comp(6008..6550)
DNA (543bp) protein (181aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEH3_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61737.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
L3_114_000M1_scaffold_472_6

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comp(6550..8253)
DNA (1704bp) protein (568aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEH5_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61739.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
oligoendopeptidase F
L3_114_000M1_scaffold_472_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8425..8676
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNG5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76100.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_472_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8952..10214)
DNA (1263bp) protein (421aa)
Aluminum resistance protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNG6_9FIRM
Aluminum resistance protein {ECO:0000313|EMBL:EFB76101.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Cystathionine beta-lyase family protein involved in aluminum resistance
L3_114_000M1_scaffold_472_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10211..10996)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNG7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76102.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_472_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11189..12586)
DNA (1398bp) protein (466aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNG8_9FIRM
L3_114_000M1_scaffold_472_11
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12690..13862)
DNA (1173bp) protein (391aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6Q298_9FIRM
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:CDC29900.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
L3_114_000M1_scaffold_472_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14178..15449)
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPB5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75611.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Hemolysins and related proteins containing CBS domains
L3_114_000M1_scaffold_472_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16005..16346)
DNA (342bp) protein (114aa)
50S ribosomal protein L17 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNH1_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L17P
L3_114_000M1_scaffold_472_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16390..17346)
DNA (957bp) protein (319aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNH2_9FIRM
L3_114_000M1_scaffold_472_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17425..18027)
DNA (603bp) protein (201aa)
30S ribosomal protein S4 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNH3_9FIRM
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
rpsD; 30S ribosomal protein S4
L3_114_000M1_scaffold_472_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18048..18452)
DNA (405bp) protein (135aa)
30S ribosomal protein S11 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNH4_9FIRM
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S11P
L3_114_000M1_scaffold_472_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18467..18838)
DNA (372bp) protein (124aa)
30S ribosomal protein S13 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNH5_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S13P
L3_114_000M1_scaffold_472_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18952..19065)
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNH6_9FIRM
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L36P
L3_114_000M1_scaffold_472_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19099..19287)
DNA (189bp) protein (63aa)
Translation initiation factor IF-1 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNH7_9FIRM
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_472_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19362..19610)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76113.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_472_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19598..20371)
DNA (774bp) protein (258aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Methionine aminopeptidase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNH9_9FIRM
methionine aminopeptidase
L3_114_000M1_scaffold_472_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20378..21010)
DNA (633bp) protein (211aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|SAAS:SAAS00079673}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|SAAS:SAAS00079673};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNI0_9FIRM
L3_114_000M1_scaffold_472_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21028..22332)
DNA (1305bp) protein (435aa)
Protein translocase subunit SecY n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNI1_9FIRM
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
preprotein translocase subunit SecY
L3_114_000M1_scaffold_472_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22334..22771)
DNA (438bp) protein (146aa)
50S ribosomal protein L15 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNI2_9FIRM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L15P
L3_114_000M1_scaffold_472_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22789..22968)
DNA (180bp) protein (60aa)
Ribosomal protein L30 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNI3_9FIRM
50S ribosomal protein L30 {ECO:0000256|SAAS:SAAS00082687}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L30P
L3_114_000M1_scaffold_472_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22982..23452)
DNA (471bp) protein (157aa)
30S ribosomal protein S5 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNI4_9FIRM
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S5P
L3_114_000M1_scaffold_472_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23502..23861)
DNA (360bp) protein (120aa)
50S ribosomal protein L18 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNI5_9FIRM
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L18P
L3_114_000M1_scaffold_472_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23880..24428)
DNA (549bp) protein (183aa)
50S ribosomal protein L6 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNI6_9FIRM
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L6P
L3_114_000M1_scaffold_472_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24445..24843)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNI7_9FIRM
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S8P
L3_114_000M1_scaffold_472_30

Not on your lists


comp(24911..25096)
DNA (186bp) protein (62aa)
Ribosomal protein S14p/S29e n=2 Tax=organismal metagenomes RepID=K1T7L1_9ZZZZ
Ribosomal protein S14p/S29e {ECO:0000313|EMBL:EKC63499.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Ribosomal protein S14
Displaying items 1-30 of 44 in total

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