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anamox2_Sphingobacteriales_41_11_curated

anamox2_Sphingobacteriales_41_1
In projects: anamox2  |  LAC_year1  |  LAC_reactor_startup  |  anammox_full

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: anamox2_Sphingobacteriales_41_11 Manually curated genome
Original version: anamox2_Sphingobacteriales_41_11

Properties

Avg. coverage: 1.00 Longest contig: 79.96 Kbp Bin length: 2.77 Mbp GC content: 41.16 %
Contigs count: 129 Features count: 2490 rRNAs count: 0 tRNAs count: 35

Genome completeness

partial RP 39 / 55 MC: 1 BSCG 37 / 51 MC: 1 ASCG 11 / 38 MC: 1
Displaying items 51-100 of 129 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
anamox2_curated_scaffold_1784
Order: Sphingobacteriales (89.47%)
19 17239 bp 40.03 1.00 91.85
anamox2_curated_scaffold_1225
Order: Sphingobacteriales (50%)
18 22519 bp 41.44 1.00 93.49
anamox2_curated_scaffold_1334
Order: Sphingobacteriales (94.44%)
18 21362 bp 41.85 1.00 92.88
anamox2_curated_scaffold_1368
Phylum: Bacteroidetes (70.59%)
17 20853 bp 40.41 1.00 92.56
anamox2_curated_scaffold_2488
Order: Sphingobacteriales (52.94%)
17 14579 bp 41.72 1.00 91.36
anamox2_curated_scaffold_2706
Phylum: Bacteroidetes (50%)
16 12614 bp 41.28 1.00 86.74
anamox2_curated_scaffold_1957
Phylum: Bacteroidetes (68.75%)
16 16187 bp 40.49 1.00 84.23
anamox2_curated_scaffold_1098
Order: Sphingobacteriales (62.5%)
16 24368 bp 40.75 1.00 85.85
anamox2_curated_scaffold_6568
Order: Sphingobacteriales (80%)
15 11600 bp 41.66 1.00 86.64
anamox2_curated_scaffold_2197
Order: Sphingobacteriales (86.67%)
15 16910 bp 41.43 1.00 89.54
anamox2_curated_scaffold_2092
Order: Sphingobacteriales (80%)
15 15536 bp 41.65 1.00 88.05
anamox2_curated_scaffold_4217
Species: Niastella koreensis (50%)
14 9271 bp 41.67 1.00 82.58
anamox2_curated_scaffold_2139
Phylum: Bacteroidetes (71.43%)
14 15478 bp 40.30 1.00 88.31
anamox2_curated_scaffold_2257
Order: Sphingobacteriales (50%)
14 14453 bp 41.71 1.00 90.29
anamox2_curated_scaffold_1277
Phylum: Bacteroidetes (71.43%)
14 21596 bp 40.21 1.00 93.17
anamox2_curated_scaffold_2351
Order: Sphingobacteriales (61.54%)
13 14186 bp 42.23 1.00 83.43
anamox2_curated_scaffold_1520
Order: Sphingobacteriales (69.23%)
13 19755 bp 42.61 1.00 94.06
anamox2_curated_scaffold_2765
Order: Sphingobacteriales (76.92%)
13 12602 bp 41.30 1.00 89.41
anamox2_curated_scaffold_3543
Order: Sphingobacteriales (69.23%)
13 10516 bp 41.54 1.00 88.66
anamox2_curated_scaffold_2622
Order: Sphingobacteriales (61.54%)
13 13074 bp 42.12 1.00 88.30
anamox2_curated_scaffold_3090
Order: Sphingobacteriales (58.33%)
12 11172 bp 41.00 1.00 86.52
anamox2_curated_scaffold_4440
Order: Sphingobacteriales (75%)
12 9359 bp 41.99 1.00 96.52
anamox2_curated_scaffold_2523
Order: Sphingobacteriales (66.67%)
12 13286 bp 41.88 1.00 88.88
anamox2_curated_scaffold_2850
Order: Sphingobacteriales (75%)
12 11928 bp 41.76 1.00 89.24
anamox2_curated_scaffold_1646
Order: Sphingobacteriales (50%)
12 18389 bp 41.81 1.00 92.04
anamox2_curated_scaffold_3420
Order: Sphingobacteriales (81.82%)
11 10292 bp 40.34 1.00 88.85
anamox2_curated_scaffold_5326
Order: Sphingobacteriales (90.91%)
11 7893 bp 41.85 1.00 94.56
anamox2_curated_scaffold_2638
Order: Sphingobacteriales (72.73%)
11 13003 bp 41.76 1.00 95.31
anamox2_curated_scaffold_3177
Order: Sphingobacteriales (81.82%)
11 11218 bp 42.40 1.00 90.42
anamox2_curated_scaffold_2513
Order: Sphingobacteriales (72.73%)
11 13434 bp 40.70 1.00 88.77
anamox2_curated_scaffold_1441
Order: Sphingobacteriales (72.73%)
11 20192 bp 42.37 1.00 94.42
anamox2_curated_scaffold_3480
Domain: Bacteria (81.82%)
11 10609 bp 40.35 1.00 94.19
anamox2_curated_scaffold_1424
Order: Sphingobacteriales (60%)
10 20543 bp 39.09 1.00 84.77
anamox2_curated_scaffold_3120
Order: Sphingobacteriales (50%)
10 11336 bp 42.19 1.00 94.03
anamox2_curated_scaffold_5226
Order: Sphingobacteriales (60%)
10 7581 bp 41.49 1.00 84.76
anamox2_curated_scaffold_5914
Order: Sphingobacteriales (50%)
10 7090 bp 41.14 1.00 85.64
anamox2_curated_scaffold_2248
Species: Niastella koreensis (50%)
10 14340 bp 40.79 1.00 92.57
anamox2_curated_scaffold_3357
Order: Sphingobacteriales (60%)
10 10910 bp 38.87 1.00 84.39
anamox2_curated_scaffold_2810
Order: Sphingobacteriales (70%)
10 12452 bp 42.47 1.00 91.91
anamox2_curated_scaffold_4701
Order: Sphingobacteriales (77.78%)
9 8187 bp 41.86 1.00 88.02
anamox2_curated_scaffold_4613
Order: Sphingobacteriales (77.78%)
9 8575 bp 41.36 1.00 85.96
anamox2_curated_scaffold_5212
Order: Sphingobacteriales (55.56%)
9 7848 bp 42.29 1.00 93.22
anamox2_curated_scaffold_7312
Phylum: Bacteroidetes (88.89%)
9 10580 bp 40.39 1.00 89.04
anamox2_curated_scaffold_3781
Order: Sphingobacteriales (66.67%)
9 9611 bp 41.27 1.00 85.90
anamox2_curated_scaffold_2900
Order: Sphingobacteriales (66.67%)
9 11807 bp 41.95 1.00 83.65
anamox2_curated_scaffold_4317
Order: Sphingobacteriales (50%)
8 8967 bp 41.45 1.00 82.00
anamox2_curated_scaffold_9482
Order: Sphingobacteriales (62.5%)
8 5820 bp 40.67 1.00 90.60
anamox2_curated_scaffold_5674
Order: Sphingobacteriales (87.5%)
8 7289 bp 41.61 1.00 86.84
anamox2_curated_scaffold_5347
Order: Sphingobacteriales (50%)
8 7892 bp 40.31 1.00 91.65
anamox2_curated_scaffold_2959
Domain: Bacteria (50%)
8 12094 bp 38.91 1.00 92.03
Displaying items 51-100 of 129 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.