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anamox2_curated_scaffold_2960

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox2_curated_scaffold_2960_1
unknown

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comp(1..201)
DNA (201bp) protein (67aa)

This feature has no annotations

anamox2_curated_scaffold_2960_2
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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276..773
DNA (498bp) protein (166aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
N5-carboxyaminoimidazole ribonucleotide mutase Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L4Q7_FRAAD
phosphoribosylaminoimidazole carboxylase catalytic subunit PurE
anamox2_curated_scaffold_2960_3
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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867..2009
DNA (1143bp) protein (381aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas malthae CC-JY-1.;"
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI000382C16E
5-(carboxyamino)imidazole ribonucleotide synthase
anamox2_curated_scaffold_2960_4
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2052..2630)
DNA (579bp) protein (193aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
superoxide dismutase Tax=Arenimonas oryziterrae RepID=UPI0003B3858C
superoxide dismutase
anamox2_curated_scaffold_2960_5
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2759..3076
DNA (318bp) protein (106aa)
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Glutaredoxin bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
glutaredoxin
anamox2_curated_scaffold_2960_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3078..3839
DNA (762bp) protein (254aa)
Short-chain dehydrogenase/reductase SDR Tax=Rhodanobacter sp. 115 RepID=I4W7S1_9GAMM
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EIL95512.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
short-chain dehydrogenase
anamox2_curated_scaffold_2960_7
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3966..4577
DNA (612bp) protein (204aa)
Multiple antibiotic transporter Tax=Rhodanobacter denitrificans RepID=M4NGJ6_9GAMM
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
multiple antibiotic transporter
anamox2_curated_scaffold_2960_8
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4837..8211
DNA (3375bp) protein (1125aa)
Protein oar Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0SY11_XANCT
Oar protein {ECO:0000313|EMBL:EYR70328.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
hypothetical protein
anamox2_curated_scaffold_2960_9
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8353..9738
DNA (1386bp) protein (462aa)
LOG family protein ygdH Tax=Dyella ginsengisoli RepID=UPI000349852A
LOG family protein
LOG family protein {ECO:0000313|EMBL:AHX12308.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
anamox2_curated_scaffold_2960_trna_3
unknown

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comp(9857..9930)
DNA (74bp)
transferRNA Asn
anamox2_curated_scaffold_2960_10
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10044..10598)
DNA (555bp) protein (185aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU20_9GAMM
Pilus biosynthesis protein {ECO:0000313|EMBL:GAN45217.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
type 4 fimbrial pilin
anamox2_curated_scaffold_2960_11
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11590..12726
DNA (1137bp) protein (379aa)
UvrABC system protein B Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU21_9GAMM
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
excinuclease ABC subunit B
anamox2_curated_scaffold_2960_trna_1
unknown

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12823..12894
DNA (72bp)
transferRNA Val
anamox2_curated_scaffold_2960_12
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13088..14995
DNA (1908bp) protein (636aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
Threonine--tRNA ligase bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
threonyl-tRNA synthetase
anamox2_curated_scaffold_2960_13
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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15156..15563
DNA (408bp) protein (136aa)
translation initiation factor IF-3 Tax=Dyella japonica RepID=UPI00030F436C
translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
anamox2_curated_scaffold_2960_14
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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15672..15869
DNA (198bp) protein (66aa)
50S ribosomal protein L35 Tax=Rudaea cellulosilytica RepID=UPI0003619AC2
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
LSU ribosomal protein L35P
anamox2_curated_scaffold_2960_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15882..16253
DNA (372bp) protein (124aa)
50S ribosomal protein L20 Tax=Rhodanobacter denitrificans RepID=I4WNQ7_9GAMM
LSU ribosomal protein L20P
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
anamox2_curated_scaffold_2960_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


16377..17372
DNA (996bp) protein (332aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Phenylalanine--tRNA ligase alpha subunit Tax=Rhodanobacter fulvus Jip2 RepID=I4VXC0_9GAMM
phenylalanyl-tRNA synthetase
anamox2_curated_scaffold_2960_17
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18552..19739
DNA (1188bp) protein (396aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
phenylalanyl-tRNA synthetase, beta subunit (EC:6.1.1.20)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI0003693E00
anamox2_curated_scaffold_2960_18
Xanthomonas fragariae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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19742..20044
DNA (303bp) protein (101aa)
Integration host factor subunit alpha Tax=Xanthomonas RepID=IHFA_XANAC
himA; Bacterial nucleoid DNA-binding protein
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fragariae LMG 25863.;"
anamox2_curated_scaffold_2960_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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20022..20378
DNA (357bp) protein (119aa)
MerR family transcriptional regulator Tax=Rudaea cellulosilytica RepID=UPI00036731E9
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:EIL94678.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
anamox2_curated_scaffold_2960_trna_2
unknown

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20454..20527
DNA (74bp)
transferRNA Pro
anamox2_curated_scaffold_2960_20

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20698..21234
DNA (537bp) protein (179aa)
proline iminopeptidase Tax=Rudaea cellulosilytica RepID=UPI00035E0EAC
Prolyl aminopeptidase {ECO:0000313|EMBL:EQD36338.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
proline iminopeptidase
Displaying 23 items

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