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anamox1_curated_scaffold_2072

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_2072_1
Methanocella paludicola, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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3..929
DNA (927bp) protein (309aa)
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 /; SANAE).;"
GDP-L-fucose synthase Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1Z264_METPS
putative GDP-L-fucose synthase
anamox1_curated_scaffold_2072_2
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

926..1657
DNA (732bp) protein (244aa)
glycosyl transferase family 2 bin=GWC1_OP11_49_16_COMPLETE species=Bacteriovorax sp. BSW11_IV genus=Bacteriovorax taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
glycosyl transferase family 2
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
anamox1_curated_scaffold_2072_3
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1669..2382
DNA (714bp) protein (238aa)
Endonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; EC=3.1.21.7 {ECO:0000256|HAMAP-Rule:MF_00801};; Deoxyinosine 3'endonuclease {ECO:0000256|HAMAP-Rule:MF_00801}; Deoxyribonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
nfi; endonuclease v (EC:3.1.21.7)
Endonuclease V Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q09CS9_STIAD
anamox1_curated_scaffold_2072_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(2419..4284)
DNA (1866bp) protein (622aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
GAF sensor signal transduction histidine kinase Tax=Pedosphaera parvula Ellin514 RepID=B9XEL2_9BACT
Signal transduction histidine kinase with GAF domain
anamox1_curated_scaffold_2072_5
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4274..4681)
DNA (408bp) protein (136aa)
Uncharacterized protein Tax=Clostridium thermocellum RepID=E6UMT8_CLOTL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABN51344.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
anamox1_curated_scaffold_2072_6
Desulfovibrio alaskensis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4762..5472)
DNA (711bp) protein (237aa)
Rhomboid family protein Tax=Desulfovibrio desulfuricans (strain G20) RepID=Q312A1_DESDG
rhomboid family protein
Rhomboid family protein {ECO:0000313|EMBL:ABB38245.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alaskensis (strain G20) (Desulfovibrio desulfuricans; (strain G20)).;"
anamox1_curated_scaffold_2072_7
unknown

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comp(5632..7233)
DNA (1602bp) protein (534aa)

This feature has no annotations

anamox1_curated_scaffold_2072_8
unknown

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comp(7245..7925)
DNA (681bp) protein (227aa)

This feature has no annotations

anamox1_curated_scaffold_2072_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(7922..8854)
DNA (933bp) protein (311aa)
ABC transporter Tax=Schlesneria paludicola RepID=UPI00029A7E3A
ABC transporter-related protein {ECO:0000313|EMBL:EDY21442.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ABC transporter
anamox1_curated_scaffold_2072_10
Thermacetogenium phaeum, Thermacetogenium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(8857..9276)
DNA (420bp) protein (140aa)
GntR family transcriptional regulator Tax=Schlesneria paludicola RepID=UPI00029B22B4
ytrA; HTH-type transcriptional repressor YtrA
HTH-type transcriptional repressor YtrA {ECO:0000313|EMBL:AFV12886.1}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermacetogenium.;" source="Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB).;"
anamox1_curated_scaffold_2072_11
RBG_13_Bacteroidetes_42_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9435..10019
DNA (585bp) protein (195aa)
Uncharacterized protein Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNU1_OPITP
hypothetical protein
Tax=RBG_13_Bacteroidetes_42_15_curated
anamox1_curated_scaffold_2072_12
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

10022..11662
DNA (1641bp) protein (547aa)
gluconate 2-dehydrogenase (acceptor) (EC:1.1.99.3)
Gluconate 2-dehydrogenase (Acceptor) {ECO:0000313|EMBL:ACB75462.1}; EC=1.1.99.3 {ECO:0000313|EMBL:ACB75462.1};; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
Gluconate 2-dehydrogenase (Acceptor) Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNU2_OPITP
anamox1_curated_scaffold_2072_13
unknown

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11653..11892
DNA (240bp) protein (80aa)

This feature has no annotations

anamox1_curated_scaffold_2072_14
Acidaminococcus intestini CAG:325, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

11934..12902
DNA (969bp) protein (323aa)
glycosyl transferase family protein (EC:2.4.1.83)
Glycosyl transferase Tax=Acidaminococcus intestini CAG:325 RepID=R6M4U4_9FIRM
Glycosyl transferase {ECO:0000313|EMBL:CDB94663.1}; species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus intestini CAG:325.;"
anamox1_curated_scaffold_2072_15
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12868..15048
DNA (2181bp) protein (727aa)
putative oxidoreductase (EC:1.1.1.-)
Putative oxidoreductase Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N2A6_ANATU
Tax=RBG_16_Deltaproteobacteria_48_10_curated
anamox1_curated_scaffold_2072_16
Candidatus Jettenia caeni, Candidatus Jettenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15333..16406
DNA (1074bp) protein (358aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae.;" source="planctomycete KSU-1.;"
mtnA; methylthioribose-1-phosphate isomerase (EC:5.3.1.23)
Methylthioribose-1-phosphate isomerase Tax=planctomycete KSU-1 RepID=I3IIW2_9PLAN
anamox1_curated_scaffold_2072_17
unknown

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comp(16446..16601)
DNA (156bp) protein (52aa)

This feature has no annotations

anamox1_curated_scaffold_2072_18
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

16711..19149
DNA (2439bp) protein (813aa)
Alpha-L-fucosidase (EC:3.2.1.51)
Alpha-L-fucosidase {ECO:0000313|EMBL:CCW35399.1}; EC=3.2.1.51 {ECO:0000313|EMBL:CCW35399.1};; species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
Alpha-L-fucosidase Tax=Chthonomonas calidirosea T49 RepID=S0EZ23_9BACT
anamox1_curated_scaffold_2072_19
R_WOR_2_67_20, WOR-2, Bacteria

Not on your lists

comp(19204..19665)
DNA (462bp) protein (154aa)
Transcriptional regulator, BadM/Rrf2 family Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8C6_GEOUR
BadM/Rrf2 family transcriptional regulator
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_67_20_curated
anamox1_curated_scaffold_2072_20

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comp(19728..20069)
DNA (342bp) protein (114aa)
hypothetical protein Tax=Bacteria RepID=UPI00036B3E6D
Uncharacterized protein {ECO:0000313|EMBL:KKL22134.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
merR family transcriptional regulator
anamox1_curated_scaffold_2072_21
CG_Delta_01, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20279..21238
DNA (960bp) protein (320aa)
Glycosyl transferase, family 2 Tax=Trichodesmium erythraeum (strain IMS101) RepID=Q116B9_TRIEI
glycosyl transferase family protein
Tax=CG_Delta_01
anamox1_curated_scaffold_2072_22
unknown

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comp(21250..21576)
DNA (327bp) protein (109aa)

This feature has no annotations

anamox1_curated_scaffold_2072_23
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

21629..23512
DNA (1884bp) protein (628aa)
hypothetical protein Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI00036FD001
hypothetical protein
Tax=RBG_16_Planctomycetes_64_10_curated
anamox1_curated_scaffold_2072_24
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

23605..24294
DNA (690bp) protein (230aa)
Putative glycosylase bin=GWB2_Nitrospirae_rel_47_37 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
HhH-GPD family protein
Tax=RBG_13_Nitrospirae_39_12_curated
anamox1_curated_scaffold_2072_25
unknown

Not on your lists

24291..24494
DNA (204bp) protein (68aa)

This feature has no annotations

anamox1_curated_scaffold_2072_26
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

Not on your lists

24481..25584
DNA (1104bp) protein (368aa)
Putative uncharacterized protein Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5LAS9_9BACI
peptidase M24
Tax=RBG_16_Chloroflexi_54_18_curated
anamox1_curated_scaffold_2072_27
Thermus sp. 2.9, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(25529..26299)
DNA (771bp) protein (257aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus sp. 2.9.;"
sensor histidine kinase Tax=Thermus islandicus RepID=UPI0003B32EEA
PAS domain-containing protein
anamox1_curated_scaffold_2072_28

Not on your lists

comp(26293..27048)
DNA (756bp) protein (252aa)
Uncharacterized protein {ECO:0000313|EMBL:KKO00632.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
id=4365813 bin=GWC2_Planctomycetes_45_44 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
anamox1_curated_scaffold_2072_29
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(27066..27659)
DNA (594bp) protein (198aa)
Threonine dehydrogenase and related Zn-dependent dehydrogenases (EC:1.1.1.14)
L-threonine 3-dehydrogenase Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B32D30
Tax=RBG_16_Planctomycetes_64_12_curated
Displaying 29 items

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