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anamox1_Sphingobacteriales_43_8_curated

anamox1_Sphingobacteriales_43_1
In projects: anamox1  |  LAC_year1  |  LAC_reactor_startup  |  anammox_full

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: anamox1_Sphingobacteriales_43_8 Manually curated genome
Original version: anamox1_Sphingobacteriales_43_8

Properties

Avg. coverage: 1.00 Longest contig: 130.03 Kbp Bin length: 3.16 Mbp GC content: 42.95 %
Contigs count: 130 Features count: 2826 rRNAs count: 0 tRNAs count: 38

Genome completeness

near complete RP 53 / 55 MC: 2 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Displaying items 51-100 of 130 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
anamox1_curated_scaffold_2914
Order: Sphingobacteriales (57.89%)
19 18050 bp 42.66 1.00 88.95
anamox1_curated_scaffold_7646
Order: Sphingobacteriales (66.67%)
9 4933 bp 42.61 1.00 89.03
anamox1_curated_scaffold_2426
Order: Sphingobacteriales (66.67%)
12 13082 bp 43.57 1.00 89.18
anamox1_curated_scaffold_12885
Genus: Flavihumibacter (60%)
5 3373 bp 44.09 1.00 89.21
anamox1_curated_scaffold_1095
Order: Sphingobacteriales (60.61%)
33 38548 bp 43.34 1.00 89.27
anamox1_curated_scaffold_1311
Order: Sphingobacteriales (65.12%)
43 45569 bp 42.15 1.00 89.42
anamox1_curated_scaffold_518
Phylum: Bacteroidetes (82.5%)
40 46647 bp 43.09 1.00 89.52
anamox1_curated_scaffold_576
Phylum: Bacteroidetes (73.85%)
65 51370 bp 42.97 1.00 89.54
anamox1_curated_scaffold_2602
Phylum: Bacteroidetes (60%)
15 12322 bp 43.98 1.00 89.55
anamox1_curated_scaffold_3487
Phylum: Bacteroidetes (78.57%)
14 12823 bp 41.82 1.00 89.58
anamox1_curated_scaffold_2182
Order: Sphingobacteriales (75%)
16 20788 bp 43.37 1.00 89.62
anamox1_curated_scaffold_917
Order: Sphingobacteriales (64%)
50 50364 bp 43.09 1.00 89.72
anamox1_curated_scaffold_399
Order: Sphingobacteriales (63.01%)
73 83739 bp 43.85 1.00 89.84
anamox1_curated_scaffold_912
Phylum: Bacteroidetes (83.87%)
31 28777 bp 43.50 1.00 89.87
anamox1_curated_scaffold_2637
Phylum: Bacteroidetes (66.67%)
15 12396 bp 40.82 1.00 89.88
anamox1_curated_scaffold_1613
Order: Sphingobacteriales (64.71%)
17 18138 bp 42.68 1.00 90.06
anamox1_curated_scaffold_639
Order: Sphingobacteriales (62.16%)
37 47334 bp 41.92 1.00 90.10
anamox1_curated_scaffold_5312
Order: Sphingobacteriales (75%)
16 12602 bp 42.26 1.00 90.18
anamox1_curated_scaffold_730
Order: Sphingobacteriales (57.14%)
35 47436 bp 44.02 1.00 90.22
anamox1_curated_scaffold_2286
Order: Sphingobacteriales (72.73%)
22 25235 bp 43.56 1.00 90.24
anamox1_curated_scaffold_2025
Genus: Flavihumibacter (57.14%)
7 15157 bp 43.62 1.00 90.39
anamox1_curated_scaffold_7333
Species: Flavihumibacter petaseus (50%)
4 5350 bp 42.67 1.00 90.45
anamox1_curated_scaffold_1032
Order: Sphingobacteriales (66.67%)
27 25866 bp 42.46 1.00 90.45
anamox1_curated_scaffold_3103
Order: Sphingobacteriales (83.33%)
12 10693 bp 42.84 1.00 90.51
anamox1_curated_scaffold_2510
Phylum: Bacteroidetes (75%)
12 12698 bp 43.72 1.00 90.51
anamox1_curated_scaffold_2674
Order: Sphingobacteriales (66.67%)
30 19537 bp 42.66 1.00 90.55
anamox1_curated_scaffold_3605
Order: Sphingobacteriales (61.54%)
13 9489 bp 43.38 1.00 90.58
anamox1_curated_scaffold_8718
Phylum: Bacteroidetes (50%)
4 4719 bp 43.91 1.00 90.65
anamox1_curated_scaffold_3020
Order: Sphingobacteriales (66.67%)
12 15381 bp 42.75 1.00 90.75
anamox1_curated_scaffold_752
Order: Sphingobacteriales (57.14%)
28 33284 bp 42.88 1.00 90.77
anamox1_curated_scaffold_3859
Order: Sphingobacteriales (75%)
8 9185 bp 43.30 1.00 90.83
anamox1_curated_scaffold_2027
Phylum: Bacteroidetes (75%)
16 20384 bp 43.73 1.00 90.85
anamox1_curated_scaffold_2553
Phylum: Bacteroidetes (66.67%)
15 12644 bp 43.85 1.00 90.92
anamox1_curated_scaffold_1189
Order: Sphingobacteriales (68.75%)
32 32348 bp 43.48 1.00 90.92
anamox1_curated_scaffold_202
Order: Sphingobacteriales (72.6%)
73 83705 bp 42.87 1.00 91.07
anamox1_curated_scaffold_1021
Order: Sphingobacteriales (79.17%)
48 46792 bp 42.80 1.00 91.12
anamox1_curated_scaffold_2033
Order: Sphingobacteriales (55.56%)
18 15169 bp 42.84 1.00 91.51
anamox1_curated_scaffold_187
Order: Sphingobacteriales (52.94%)
102 104142 bp 43.24 1.00 91.57
anamox1_curated_scaffold_148
Phylum: Bacteroidetes (69.41%)
85 102148 bp 41.89 1.00 91.77
anamox1_curated_scaffold_1068
Order: Sphingobacteriales (63.16%)
19 28249 bp 43.30 1.00 91.88
anamox1_curated_scaffold_2065
Order: Sphingobacteriales (68.42%)
19 23318 bp 42.81 1.00 91.91
anamox1_curated_scaffold_618
Order: Sphingobacteriales (73.53%)
34 43099 bp 44.60 1.00 92.07
anamox1_curated_scaffold_8309
Order: Sphingobacteriales (50%)
6 4833 bp 44.98 1.00 92.18
anamox1_curated_scaffold_323
Order: Sphingobacteriales (50%)
48 58525 bp 42.78 1.00 92.23
anamox1_curated_scaffold_5248
Order: Sphingobacteriales (66.67%)
9 7008 bp 43.78 1.00 92.47
anamox1_curated_scaffold_691
Phylum: Bacteroidetes (63.33%)
30 35365 bp 45.01 1.00 92.48
anamox1_curated_scaffold_1256
Order: Sphingobacteriales (71.05%)
38 41374 bp 43.09 1.00 92.92
anamox1_curated_scaffold_3663
Phylum: Bacteroidetes (73.33%)
15 10870 bp 41.78 1.00 92.98
anamox1_curated_scaffold_1368
Phylum: Bacteroidetes (68.42%)
38 30053 bp 41.33 1.00 93.03
anamox1_curated_scaffold_1409
Order: Sphingobacteriales (70.97%)
31 32616 bp 44.53 1.00 93.14
Displaying items 51-100 of 130 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.