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NECEvent2014_2_3_scaffold_262

Alias: 172_003_scaffold_262

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_262_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

188..934
DNA (747bp) protein (249aa)
Clostridium difficile binary toxin regulatory gene, LytTR family n=156 Tax=Clostridium difficile RepID=Q182U3_CLOD6 rbh
cdtR; Clostridium difficile binary toxin regulatorygene, LytTR family
CdtR {ECO:0000313|EMBL:AEC11568.1}; Clostridium difficile binary toxin regulatorygene, LytTR family {ECO:0000313|EMBL:CEJ99230.1}; Response regulator {ECO:0000313|EMBL:CKH38423.1}; TaxID=1496 species=
NECEvent2014_2_3_scaffold_262_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1323..1511
DNA (189bp) protein (63aa)
Uncharacterized protein n=73 Tax=Clostridium difficile RepID=G6BZS2_CLODI
ADP-ribosyltransferase subunit CdtA {ECO:0000313|EMBL:CKH38462.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostrid
ADP-ribosyltransferase subunit CdtA
NECEvent2014_2_3_scaffold_262_3
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1685..2875)
DNA (1191bp) protein (397aa)
Site-specific recombinase, phage integrase family n=5 Tax=Clostridiales RepID=C0EE63_9CLOT rbh
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EEG30211.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[C
int-Tn; integrase
NECEvent2014_2_3_scaffold_262_4
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2953..3156)
DNA (204bp) protein (68aa)
Excisionase from transposon Tn916 n=10 Tax=Firmicutes RepID=C0EE64_9CLOT
Excisionase from transposon Tn916 {ECO:0000313|EMBL:EEG30212.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] meth
xis; excisionase
NECEvent2014_2_3_scaffold_262_5
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3528..3776)
DNA (249bp) protein (83aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=C0EE65_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG30213.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum
hypothetical protein
NECEvent2014_2_3_scaffold_262_6
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3779..4198)
DNA (420bp) protein (140aa)
Sigma-70, region 4 n=77 Tax=Firmicutes RepID=C0EE66_9CLOT
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EOI44396.1}; TaxID=1158636 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus
RNA polymerase sigma factor
NECEvent2014_2_3_scaffold_262_7
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4465..4695)
DNA (231bp) protein (77aa)
Uncharacterized protein n=71 Tax=Clostridiales RepID=T2W4R4_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEG30215.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum
NECEvent2014_2_3_scaffold_262_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4719..4910)
DNA (192bp) protein (64aa)
Uncharacterized protein n=62 Tax=Clostridiales RepID=C0EE68_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL32000.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_262_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4974..5432)
DNA (459bp) protein (153aa)
Glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein n=4 Tax=Clostridium difficile RepID=T2TXE6_CLODI rbh
Glyoxalase {ECO:0000313|EMBL:KEY28743.1}; TaxID=1457183 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis EK3.
putative glyoxalase
NECEvent2014_2_3_scaffold_262_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5580..6296)
DNA (717bp) protein (239aa)
Methyltransferase domain protein n=80 Tax=Firmicutes RepID=C0EE70_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCL23368.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
hypothetical protein
NECEvent2014_2_3_scaffold_262_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6418..7044)
DNA (627bp) protein (209aa)
Bacterial regulatory s, tetR family protein n=4 Tax=Clostridium difficile RepID=T2TW51_CLODI rbh
Uncharacterized protein {ECO:0000313|EMBL:CCL32105.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
putative TetR family transcriptional regulator
NECEvent2014_2_3_scaffold_262_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7334..7474)
DNA (141bp) protein (47aa)
Uncharacterized protein n=14 Tax=Firmicutes RepID=C0EE72_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCL23370.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_262_13
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7526..8437)
DNA (912bp) protein (304aa)
Cation diffusion facilitator family transporter n=34 Tax=Firmicutes RepID=R2UF56_ENTFC rbh
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EOI44390.1}; TaxID=1158636 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococ
hypothetical protein
NECEvent2014_2_3_scaffold_262_14
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8449..9147)
DNA (699bp) protein (233aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=R2WPA8_ENTFC rbh
Uncharacterized protein {ECO:0000313|EMBL:EOI44389.1}; TaxID=1158636 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium EnGen0313.;"
ABC transporter permease
NECEvent2014_2_3_scaffold_262_15
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9144..9827)
DNA (684bp) protein (228aa)
Uncharacterized protein n=7 Tax=Firmicutes PF8_ENTFC">RepID=R2WPF8_ENTFC rbh
Uncharacterized protein {ECO:0000313|EMBL:EOI44388.1}; TaxID=1158636 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium EnGen0313.;"
ABC transporter permease
NECEvent2014_2_3_scaffold_262_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9824..10669)
DNA (846bp) protein (282aa)
Putative enzyme {ECO:0000313|EMBL:CCL23376.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCL23376.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridiu
ABC transporter, ATP-binding protein n=76 Tax=Firmicutes RepID=G6BQP1_CLODI rbh
ABC transporter ATP-binding protein
NECEvent2014_2_3_scaffold_262_17
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10773..11360)
DNA (588bp) protein (196aa)
Transcriptional regulator, TetR family n=2 Tax=Clostridiales RepID=C0EE77_9CLOT rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEG30225.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium]
transcriptional regulator
NECEvent2014_2_3_scaffold_262_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11432..12289)
DNA (858bp) protein (286aa)
Uncharacterized protein n=14 Tax=Clostridium difficile RepID=G6BQN9_CLODI rbh
Alpha/beta hydrolase family protein {ECO:0000313|EMBL:EQE70018.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclost
hypothetical protein
NECEvent2014_2_3_scaffold_262_19
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12502..13116)
DNA (615bp) protein (205aa)
Conjugative transposon TcpC family protein n=26 Tax=Firmicutes RepID=T2V8M9_CLODI rbh
Uncharacterized protein {ECO:0000313|EMBL:EOI44384.1}; TaxID=1158636 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium EnGen0313.;"
putative conjugative transposon proteinTn916-like, CTn1-Orf16
NECEvent2014_2_3_scaffold_262_20
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13064..13825)
DNA (762bp) protein (254aa)
NlpC/P60 family protein n=21 Tax=Firmicutes RepID=C0EE80_9CLOT rbh
Lipoprotein {ECO:0000313|EMBL:EOI44383.1}; TaxID=1158636 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium EnGen0313.;"
hypothetical protein
NECEvent2014_2_3_scaffold_262_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13968..14207)
DNA (240bp) protein (80aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=U4B1X7_CLODI
Uncharacterized protein; TaxID=1215080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E28.;"
NECEvent2014_2_3_scaffold_262_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14272..14706)
DNA (435bp) protein (145aa)
Uncharacterized protein n=65 Tax=Firmicutes RepID=C0EE81_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQE59176.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
DNA-binding domain-containing protein
NECEvent2014_2_3_scaffold_262_23
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14766..15695)
DNA (930bp) protein (310aa)
Bacterial regulatory helix-turn-helix s, AraC family protein n=4 Tax=Clostridium difficile RepID=T2TW60_CLODI rbh
Uncharacterized protein {ECO:0000313|EMBL:EOI44381.1}; TaxID=1158636 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium EnGen0313.;"
DNA-binding domain-containing protein
NECEvent2014_2_3_scaffold_262_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15844..15957)
DNA (114bp) protein (38aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=T2TX25_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL24202.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_262_25
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15962..16513)
DNA (552bp) protein (184aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=R2UF44_ENTFC rbh
Uncharacterized protein {ECO:0000313|EMBL:EOI44380.1}; TaxID=1158636 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium EnGen0313.;"
GNAT family acetyltransferase
NECEvent2014_2_3_scaffold_262_26
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16527..17003)
DNA (477bp) protein (159aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=R2WP97_ENTFC rbh
Uncharacterized protein {ECO:0000313|EMBL:EOI44379.1}; TaxID=1158636 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium EnGen0313.;"
hypothetical protein
NECEvent2014_2_3_scaffold_262_27
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17084..17899)
DNA (816bp) protein (272aa)
Uncharacterized protein n=6 Tax=Firmicutes RepID=R2WPE3_ENTFC rbh
Uncharacterized protein {ECO:0000313|EMBL:EOI44378.1}; TaxID=1158636 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium EnGen0313.;"
MerR family transcriptional regulator
NECEvent2014_2_3_scaffold_262_28
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18002..18904)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Enterococcus faecium EnGen0313 RepID=R2X2P3_ENTFC rbh
Uncharacterized protein {ECO:0000313|EMBL:EOI44377.1}; TaxID=1158636 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium EnGen0313.;"
hypothetical protein
NECEvent2014_2_3_scaffold_262_29
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18920..19414)
DNA (495bp) protein (165aa)
Lipoprotein n=2 Tax=Firmicutes RepID=R2UF81_ENTFC
Lipoprotein {ECO:0000313|EMBL:EOI44376.1}; TaxID=1158636 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium EnGen0313.;"
hypothetical protein
Displaying 29 items

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