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NECEvent2014_2_3_scaffold_57

Alias: 172_003_scaffold_57

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_57_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..573)
DNA (573bp) protein (191aa)
diaminopropionate ammonia-lyase (EC:4.3.1.15)
Diaminopropionate ammonia-lyase family protein n=1 Tax=Clostridium difficile (strain CD196) RepID=T3IKY7_CLODC rbh
Diaminopropionate ammonia-lyase {ECO:0000313|EMBL:CBE04967.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridiu
NECEvent2014_2_3_scaffold_57_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(936..1607)
DNA (672bp) protein (224aa)
Flavin reductase n=218 Tax=Clostridium difficile RepID=D5Q3N0_CLODI rbh
iron-sulfur flavoprotein
Putative NAD(P)H-dependent FMN reductase {ECO:0000313|EMBL:CAJ68971.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoc
NECEvent2014_2_3_scaffold_57_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1690..3906)
DNA (2217bp) protein (739aa)
putative xanthine dehydrogenase (EC:1.17.1.4)
Putative xanthine dehydrogenase {ECO:0000313|EMBL:CAJ68972.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CAJ68972.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae;
Molybdopterin-binding domain of aldehyde dehydrogenase family protein n=24 Tax=Clostridium difficile RepID=T2TYH8_CLODI rbh
NECEvent2014_2_3_scaffold_57_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3909..4379)
DNA (471bp) protein (157aa)
xdhC2; xanthine dehydrogenase iron-sulfur binding subunit XdhC2 (EC:1.17.1.4)
Xanthine dehydrogenase iron-sulfur binding subunit XdhC2 {ECO:0000313|EMBL:CAJ68973.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CAJ68973.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiale
Xanthine dehydrogenase iron-sulfur binding subunit XdhC2 n=191 Tax=Clostridium difficile RepID=Q188F6_CLOD6 rbh
NECEvent2014_2_3_scaffold_57_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4441..5862)
DNA (1422bp) protein (474aa)
Amidohydrolase family protein n=185 Tax=Clostridium difficile RepID=G6BQA5_CLODI rbh
Amidohydrolase family protein {ECO:0000313|EMBL:EHJ26696.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
amidohydrolase
NECEvent2014_2_3_scaffold_57_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5908..7269)
DNA (1362bp) protein (454aa)
Uracil-xanthine permease family protein n=11 Tax=Clostridium difficile RepID=T3FM29_CLODI rbh
xanthine/uracile permease
Putative xanthine/uracile permease {ECO:0000313|EMBL:CDS88197.1}; Xanthine/uracile permease {ECO:0000313|EMBL:CKH21278.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostr
NECEvent2014_2_3_scaffold_57_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7566..8915)
DNA (1350bp) protein (450aa)
Xanthine permease family protein n=122 Tax=Clostridium difficile RepID=T2TM70_CLODI rbh
xanthine/uracile permease
Putative xanthine/uracile permease {ECO:0000313|EMBL:CBE04977.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostri
NECEvent2014_2_3_scaffold_57_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9244..10284)
DNA (1041bp) protein (347aa)
AAA domain family protein n=201 Tax=Clostridium difficile RepID=C9XJV7_CLODC rbh
sigma-54-dependent transcriptional regulator
Transcriptional regulator, sigma-54-dependent {ECO:0000313|EMBL:CCL30308.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="
NECEvent2014_2_3_scaffold_57_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10611..11879)
DNA (1269bp) protein (423aa)
Uncharacterized protein n=54 Tax=Clostridium difficile RepID=Q188G2_CLOD6 rbh
conserved hypothetical protein
5-methylcytosine restriction system component-like protein {ECO:0000313|EMBL:CKH21365.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ98689.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; C
NECEvent2014_2_3_scaffold_57_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11872..13806)
DNA (1935bp) protein (645aa)
AAA domain family protein n=74 Tax=Clostridium difficile RepID=T3GJX8_CLODC rbh
restriction enzyme
Putative restriction enzyme {ECO:0000313|EMBL:CAJ68979.2}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium di
NECEvent2014_2_3_scaffold_57_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13835..14557)
DNA (723bp) protein (241aa)
FtsZ family, C-terminal domain protein n=37 Tax=Clostridium difficile RepID=T3GIX3_CLODC rbh
putative cell division GTPase
FtsZ family, C-terminal domain protein {ECO:0000313|EMBL:EQG76061.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptocl
NECEvent2014_2_3_scaffold_57_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14607..15611)
DNA (1005bp) protein (335aa)
DeoR-like helix-turn-helix domain protein n=53 Tax=Clostridium difficile RepID=C9XJW1_CLODC rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE04987.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_57_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15650..16150)
DNA (501bp) protein (167aa)
QueT transporter family protein n=199 Tax=Clostridium difficile RepID=T3GNZ4_CLODC rbh
putative membrane protein, DUF988 family
QueT transporter family protein {ECO:0000313|EMBL:EQE62840.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridi
NECEvent2014_2_3_scaffold_57_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16436..16747)
DNA (312bp) protein (104aa)
Uncharacterized protein n=184 Tax=Clostridium difficile RepID=C9XJW3_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE62839.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_57_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16887..19151)
DNA (2265bp) protein (755aa)
XdhD; xanthine dehydrogenase subunit XdhD (EC:1.17.1.4)
Xanthine dehydrogenase subunit XdhD,molybdopterin-binding {ECO:0000313|EMBL:CAJ68984.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CAJ68984.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridial
Molybdopterin-binding domain of aldehyde dehydrogenase family protein n=43 Tax=Clostridium difficile RepID=T3GJX4_CLODC rbh
NECEvent2014_2_3_scaffold_57_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19155..19604)
DNA (450bp) protein (150aa)
2Fe-2S iron-sulfur cluster binding domain protein n=191 Tax=Clostridium difficile RepID=C9XJW5_CLODC rbh
[2Fe-2S]-binding subunit of oxidoreductase
Putative [2Fe-2S]-binding subunit of oxidoreductase {ECO:0000313|EMBL:CBE04994.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sou
NECEvent2014_2_3_scaffold_57_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19604..20392)
DNA (789bp) protein (263aa)
FAD binding domain in molybdopterin dehydrogenase family protein n=153 Tax=Clostridium difficile RepID=C9XJW6_CLODC rbh
FAD-binding subunit of oxidoreductase
Xanthine dehydrogenase subunit XdhB,FAD-binding {ECO:0000313|EMBL:CCL30317.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source
NECEvent2014_2_3_scaffold_57_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20587..21855)
DNA (1269bp) protein (423aa)
Transporter, CPA2 family n=190 Tax=Clostridium difficile RepID=G6BCD6_CLODI rbh
Na(+)/H(+) antiporter
Putative Na(+)/H(+) antiporter {ECO:0000313|EMBL:CCK98488.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridiu
NECEvent2014_2_3_scaffold_57_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22196..22357)
DNA (162bp) protein (54aa)
Uncharacterized protein n=192 Tax=Clostridium difficile RepID=F3Y5U5_CLOD6
conserved hypothetical protein
Putative dNA polymerase III {ECO:0000313|EMBL:EQH98903.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium d
NECEvent2014_2_3_scaffold_57_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22506..23588)
DNA (1083bp) protein (361aa)
ABC-type transport system, permease n=113 Tax=Clostridium difficile RepID=Q188H2_CLOD6 rbh
ABC transporter permease
ABC-type transport system, permease {ECO:0000313|EMBL:CAJ68988.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostr
NECEvent2014_2_3_scaffold_57_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23691..25286)
DNA (1596bp) protein (532aa)
ABC-type transport system, permease n=27 Tax=Clostridium difficile RepID=Q188H1_CLOD6 rbh
ABC-type transport system, permease
ABC transporter permease {ECO:0000313|EMBL:CKH21729.1}; ABC-type transport system, permease {ECO:0000313|EMBL:CEJ98701.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostr
NECEvent2014_2_3_scaffold_57_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25333..26040)
DNA (708bp) protein (236aa)
ABC-type transport system, multidrug-family ATP-binding protein {ECO:0000313|EMBL:CCL30322.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCL30322.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clost
ABC transporter, ATP-binding protein n=194 Tax=Clostridium difficile RepID=C9XJX0_CLODC rbh
ABC transporter ATP-binding protein
NECEvent2014_2_3_scaffold_57_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26293..27438
DNA (1146bp) protein (382aa)
ATP-dependent RNA helicase {ECO:0000313|EMBL:CKH21787.1}; EC=3.6.4.13 {ECO:0000313|EMBL:CKH21787.1};; Putative ATP-dependent RNA helicase {ECO:0000313|EMBL:CDS88348.1}; TaxID=1496 species="Bacteria; F
Helicase conserved C-terminal domain protein n=63 Tax=Clostridium difficile RepID=T3GJQ2_CLODC rbh
putative ATP-dependent RNA helicase
NECEvent2014_2_3_scaffold_57_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27552..28928)
DNA (1377bp) protein (459aa)
Permease family protein n=175 Tax=Clostridium difficile RepID=T3GIP5_CLODC rbh
xanthine/uracil/thiamine/ascorbate permease family protein
Permease family protein {ECO:0000313|EMBL:EQE62856.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_57_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29374..30720
DNA (1347bp) protein (449aa)
MATE efflux family protein n=17 Tax=Clostridium difficile RepID=T2UQR1_CLODI rbh
putative drug/sodium antiporter, MATE family
Drug/sodium antiporter {ECO:0000313|EMBL:CKH21861.1}; Putative drug/sodium antiporter, MATE family {ECO:0000313|EMBL:CEJ98705.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; P
NECEvent2014_2_3_scaffold_57_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30780..32192
DNA (1413bp) protein (471aa)
Citrate transporter family protein n=10 Tax=Clostridium difficile RepID=T3P466_CLODI rbh
sodium:sulfate symporter
Putative sodium:sulfate symporter {ECO:0000313|EMBL:CBE05010.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostrid
NECEvent2014_2_3_scaffold_57_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32314..32988)
DNA (675bp) protein (225aa)
putative transaldolase C-like (EC:2.2.1.2)
Transaldolase {ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|SAAS:SAAS00118670};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridi
Fructose-6-phosphate aldolase n=146 Tax=Clostridium difficile RepID=T3GIM9_CLODC rbh
NECEvent2014_2_3_scaffold_57_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33262..34026
DNA (765bp) protein (255aa)
Transcriptional regulator, DeoR family n=181 Tax=Clostridium difficile RepID=Q185Q0_CLOD6 rbh
DeoR family transcriptional regulator
DeoR-like helix-turn-helix domain protein {ECO:0000313|EMBL:EQH98912.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pept
NECEvent2014_2_3_scaffold_57_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34315..34536)
DNA (222bp) protein (74aa)
Uncharacterized protein n=164 Tax=Clostridium difficile RepID=C9XJX7_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL30330.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_57_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34937..36214)
DNA (1278bp) protein (426aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclos
Two-component sensor histidine kinase n=158 Tax=Clostridium difficile RepID=Q185Q2_CLOD6 rbh
Two-component sensor histidine kinase
Displaying items 1-30 of 55 in total

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