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NECEvent2014_2_3_scaffold_72

Alias: 172_003_scaffold_72

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_72_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

162..815
DNA (654bp) protein (218aa)
Uncharacterized protein n=5 Tax=Clostridium difficile RepID=U3W744_CLODI rbh
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CEJ96666.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_72_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

833..1141
DNA (309bp) protein (103aa)
CAAX protease self-immunity family protein n=15 Tax=Clostridium difficile RepID=T2W5T8_CLODI
putative membrane protein
CAAX protease self-immunity family protein {ECO:0000313|EMBL:EQG78756.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pep
NECEvent2014_2_3_scaffold_72_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1240..2202)
DNA (963bp) protein (321aa)
CAAX protease self-immunity family protein n=61 Tax=Clostridium difficile RepID=T3INQ0_CLODC rbh
membrane protein
Putative membrane-membrane-associated CAAX amino terminal protease {ECO:0000313|EMBL:CAJ66976.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclo
NECEvent2014_2_3_scaffold_72_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2517..3467)
DNA (951bp) protein (317aa)
4-hydroxyphenylacetate decarboxylase activating enzyme {ECO:0000313|EMBL:CDS83148.1}; EC=1.97.1.- {ECO:0000313|EMBL:CDS83148.1};; 4-hydroxyphenylacetate decarboxylase, activating subunit {ECO:0000313|
4-hydroxyphenylacetate decarboxylase activating enzyme n=52 Tax=Clostridium difficile RepID=HPDA_CLOD6 rbh
putative 4-hydroxyphenylacetatedecarboxylase,activating subunit HpdA; putativeglycyl-radical activating family protein
NECEvent2014_2_3_scaffold_72_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3460..3717)
DNA (258bp) protein (86aa)
4-hydroxyphenylacetate decarboxylase small subunit {ECO:0000313|EMBL:EQG78757.1}; EC=4.1.1.83 {ECO:0000313|EMBL:EQG78757.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pe
4-hydroxyphenylacetate decarboxylase small subunit n=202 Tax=Clostridium difficile RepID=HPDS_CLOD6
putative 4-hydroxyphenylacetatedecarboxylase,regulatory subunit HpdC
NECEvent2014_2_3_scaffold_72_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3721..6429)
DNA (2709bp) protein (903aa)
4-hydroxyphenylacetate decarboxylase catalytic subunit {ECO:0000313|EMBL:CKH80474.1}; EC=4.1.1.83 {ECO:0000313|EMBL:CKH80474.1};; 4-hydroxyphenylacetate decarboxylase large subunit {ECO:0000313|EMBL:C
4-hydroxyphenylacetate decarboxylase large subunit n=106 Tax=Clostridium difficile RepID=HPDL_CLOD6 rbh
putative 4-hydroxyphenylacetatedecarboxylase,catalytic subunit HpdB
NECEvent2014_2_3_scaffold_72_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6726..7742)
DNA (1017bp) protein (339aa)
gcp; UGMP family protein (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000255|HAMAP-Rule:MF_01445}; EC=2.3.1.234 {ECO:0000255|HAMAP-Rule:MF_01445};; N6-L-threonylcarbamoyladenine synthase {ECO:0000255|HAMAP-Rule:MF_014
tRNA N6-adenosine threonylcarbamoyltransferase n=97 Tax=Clostridium difficile RepID=TSAD_CLOD6 rbh
NECEvent2014_2_3_scaffold_72_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7748..8224)
DNA (477bp) protein (159aa)
rimI; putative alanine acetyltransferase, ribosomalfamily (EC:2.3.1.128)
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:EQG78672.1}; EC=2.3.1.128 {ECO:0000313|EMBL:EQG78672.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostr
Ribosomal-protein-alanine acetyltransferase n=172 Tax=Clostridium difficile RepID=T3IQ00_CLODC rbh
NECEvent2014_2_3_scaffold_72_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8214..8930)
DNA (717bp) protein (239aa)
tRNA threonylcarbamoyl adenosine modification protein YeaZ n=24 Tax=Clostridium difficile RepID=T3INQ5_CLODC rbh
putative peptidase, M22 family
Glycoprotease {ECO:0000313|EMBL:CKH80559.1}; Putative peptidase, M22 family {ECO:0000313|EMBL:CEJ96659.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; P
NECEvent2014_2_3_scaffold_72_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8930..9382)
DNA (453bp) protein (151aa)
Hydrolase, P-loop family n=161 Tax=Clostridium difficile RepID=G6BQU9_CLODI rbh
ATP/GTP hydrolase
Putative ATP/GTP hydrolase {ECO:0000313|EMBL:CBE01720.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium dif
NECEvent2014_2_3_scaffold_72_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9521..10561)
DNA (1041bp) protein (347aa)
Uncharacterized protein n=88 Tax=Clostridium difficile RepID=Q18CN7_CLOD6 rbh
uncharacterised protein
Uncharacterised protein {ECO:0000313|EMBL:CAJ66968.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_72_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10890..11495)
DNA (606bp) protein (202aa)
Uncharacterized protein n=167 Tax=Clostridium difficile RepID=D5Q983_CLODI rbh
riboflavin transporter
Riboflavin transporter {ECO:0000256|PIRNR:PIRNR037778}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_72_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11797..12963)
DNA (1167bp) protein (389aa)
Amidohydrolase family protein n=25 Tax=Clostridium difficile RepID=T3INV8_CLODC rbh
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:CAJ66966.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (
NECEvent2014_2_3_scaffold_72_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13111..15252)
DNA (2142bp) protein (714aa)
S1 RNA binding domain protein n=131 Tax=Clostridium difficile RepID=T3IIT8_CLODC rbh
Putative S1 RNA-binding domain-containingprotein {ECO:0000313|EMBL:CEJ96654.1}; RNA-binding protein {ECO:0000313|EMBL:CKH80695.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales;
putative S1 RNA-binding domain-containingprotein
NECEvent2014_2_3_scaffold_72_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15396..16412)
DNA (1017bp) protein (339aa)
Peptide chain release factor 2 n=151 Tax=Clostridium difficile RepID=C9XIR6_CLODC rbh
prfB; peptide chain release factor 2
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=645463 species="Bacteria; Firmicutes; Clostridia;
NECEvent2014_2_3_scaffold_72_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16481..16573)
DNA (93bp) protein (31aa)
Uncharacterized protein n=25 Tax=Clostridium difficile RepID=U3WU37_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL21164.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_72_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16518..19193)
DNA (2676bp) protein (892aa)
Protein translocase subunit SecA 1 n=198 Tax=Clostridium difficile RepID=SECA1_CLOD6 rbh
secA1; Protein translocase subunit SecA1
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoc
NECEvent2014_2_3_scaffold_72_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19325..19876)
DNA (552bp) protein (184aa)
Ribosomal subunit interface protein n=24 Tax=Clostridium difficile RepID=T2TRA5_CLODI rbh
putative RNA-binding protein
Ribosomal subunit interface protein {ECO:0000313|EMBL:EHJ34747.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostr
NECEvent2014_2_3_scaffold_72_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20104..20271)
DNA (168bp) protein (56aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=G6BQU1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS83121.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficil
NECEvent2014_2_3_scaffold_72_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20429..21103)
DNA (675bp) protein (225aa)
CutC family protein n=40 Tax=Clostridium difficile RepID=T3IIT4_CLODC rbh
cutC; Copper homeostasis protein
Copper homeostasis protein {ECO:0000313|EMBL:CCL21161.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium di
NECEvent2014_2_3_scaffold_72_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21106..22158)
DNA (1053bp) protein (351aa)
Peptidase {ECO:0000313|EMBL:CKH80837.1}; EC=3.4.13.- {ECO:0000313|EMBL:CKH80837.1};; Putative peptidase {ECO:0000313|EMBL:CEJ96649.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridial
Dipeptidase family protein n=27 Tax=Clostridium difficile RepID=T3IK45_CLODC rbh
putative peptidase
NECEvent2014_2_3_scaffold_72_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22207..23166)
DNA (960bp) protein (320aa)
N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase (EC:3.5.1.26)
N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase {ECO:0000313|EMBL:CCL29072.1}; EC=3.5.1.26 {ECO:0000313|EMBL:CCL29072.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pepto
N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase n=125 Tax=Clostridium difficile RepID=T3ILR0_CLODC rbh
NECEvent2014_2_3_scaffold_72_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23262..23780)
DNA (519bp) protein (173aa)
SelenoB, glycine/betaine/sarcosine/D-proline reductase family protein n=45 Tax=Clostridium difficile RepID=T3IQ51_CLODC rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL29071.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_72_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23791..25125)
DNA (1335bp) protein (445aa)
PTS system, cellobiose-specific IIC component n=28 Tax=Clostridium difficile RepID=T3INU9_CLODC rbh
PTS system, lactose/cellobiose-family IICcomponent
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffici
NECEvent2014_2_3_scaffold_72_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25164..25490)
DNA (327bp) protein (109aa)
PTS system, IIb component n=212 Tax=Clostridium difficile RepID=C9XIQ8_CLODC
PTS system transporter subunit IIB
PTS system, Lactose/Cellobiose specific IIB subunit {ECO:0000313|EMBL:EHJ34754.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sou
NECEvent2014_2_3_scaffold_72_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25514..25822)
DNA (309bp) protein (103aa)
PTS system, IIa component n=218 Tax=Clostridium difficile RepID=C9XIQ7_CLODC
PTS system transporter subunit IIA
PTS system, lactose/cellobiose-family IIA component {ECO:0000313|EMBL:CCL29068.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" so
NECEvent2014_2_3_scaffold_72_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25963..27876)
DNA (1914bp) protein (638aa)
Transcription antiterminator, PTS operon regulator n=2 Tax=Clostridium difficile RepID=Q18CM3_CLOD6 rbh
Transcription antiterminator, PTS operonregulator
Transcription antiterminator, PTS operonregulator {ECO:0000313|EMBL:CEJ96643.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source=
NECEvent2014_2_3_scaffold_72_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28208..28990)
DNA (783bp) protein (261aa)
Phosphoribosyl transferase domain protein n=6 Tax=Clostridium difficile RepID=T3IQ84_CLODC rbh
putative phosphoribosyl transferase
Phosphoribosyl transferase {ECO:0000313|EMBL:CKH81111.1}; Putative phosphoribosyl transferase {ECO:0000313|EMBL:CEJ96642.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptos
NECEvent2014_2_3_scaffold_72_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28993..31212)
DNA (2220bp) protein (740aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostre
Helicase, RecD/TraA family n=95 Tax=Clostridium difficile RepID=G6BQT1_CLODI rbh
DNA-binding protein
NECEvent2014_2_3_scaffold_72_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31476..32573)
DNA (1098bp) protein (366aa)
Uncharacterized protein n=136 Tax=Clostridium difficile RepID=G6B303_CLODI rbh
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CAJ66951.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
Displaying items 1-30 of 55 in total

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