ggKbase home page

NECEvent2014_2_3_scaffold_86

Alias: 172_003_scaffold_86

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_86_trna_1
unknown

Not on your lists

12..85
DNA (74bp)
transferRNA
NECEvent2014_2_3_scaffold_86_trna_2
unknown

Not on your lists

106..179
DNA (74bp)
transferRNA
NECEvent2014_2_3_scaffold_86_trna_3
unknown

Not on your lists

191..263
DNA (73bp)
transferRNA
NECEvent2014_2_3_scaffold_86_trna_4
unknown

Not on your lists

274..344
DNA (71bp)
transferRNA
NECEvent2014_2_3_scaffold_86_trna_5
unknown

Not on your lists

355..428
DNA (74bp)
transferRNA
NECEvent2014_2_3_scaffold_86_trna_6
unknown

Not on your lists

444..516
DNA (73bp)
transferRNA
NECEvent2014_2_3_scaffold_86_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

595..1008
DNA (414bp) protein (138aa)
Uncharacterized protein n=51 Tax=Clostridium difficile RepID=T3IJT7_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE71060.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_86_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1018..1113
DNA (96bp) protein (32aa)
Uncharacterised protein {ECO:0000313|EMBL:CKH92086.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficil
NECEvent2014_2_3_scaffold_86_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1317..4748
DNA (3432bp) protein (1144aa)
Pyruvate carboxylase {ECO:0000256|PIRNR:PIRNR001594}; EC=6.4.1.1 {ECO:0000256|PIRNR:PIRNR001594};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoc
Pyruvate carboxylase n=141 Tax=Clostridium difficile RepID=C9XID3_CLODC rbh
pyc; pyruvate carboxylase
NECEvent2014_2_3_scaffold_86_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4781..4930
DNA (150bp) protein (50aa)
Uncharacterized protein n=131 Tax=Clostridium difficile RepID=T3IMQ2_CLODC
Uncharacterized protein {ECO:0000313|EMBL:EQE71058.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_86_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4990..6918
DNA (1929bp) protein (643aa)
Elongation factor G (EF-G) n=181 Tax=Clostridium difficile RepID=Q18CA6_CLOD6 rbh
putative translation elongation factor
Elongation factor G {ECO:0000313|EMBL:CDS88901.1}; Elongation factor G (EF-G) {ECO:0000313|EMBL:CDS90266.1}; Putative translation elongation factor {ECO:0000313|EMBL:CKH92134.1}; TaxID=1496 species="B
NECEvent2014_2_3_scaffold_86_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6994..7116
DNA (123bp) protein (41aa)
Uncharacterized protein n=81 Tax=Clostridium difficile RepID=G6BS94_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQG79032.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_86_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7371..7835
DNA (465bp) protein (155aa)
Transcriptional regulator n=211 Tax=Clostridium difficile RepID=C9XID5_CLODC rbh
transcriptional regulator CtsR
Firmicute transcriptional repressor of class III stress {ECO:0000313|EMBL:EHJ32585.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;"
NECEvent2014_2_3_scaffold_86_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7842..8336
DNA (495bp) protein (165aa)
Activator of protein kinase McsB n=212 Tax=Clostridium difficile RepID=Q18CA7_CLOD6 rbh
mcsA; activator of protein kinase McsB
Uncharacterized protein {ECO:0000313|EMBL:EHJ34511.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_86_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8352..9377
DNA (1026bp) protein (342aa)
Protein-arginine kinase {ECO:0000256|HAMAP-Rule:MF_00602, ECO:0000256|SAAS:SAAS00166216}; EC=2.7.14.1 {ECO:0000256|HAMAP-Rule:MF_00602, ECO:0000256|SAAS:SAAS00166206};; TaxID=1151268 species="Bacteria
Putative ATP:guanido phosphotransferase QEE_0026 n=1 Tax=Clostridium difficile CD113 RepID=T4YM09_CLODI rbh
ATP:guanido phosphotransferase
NECEvent2014_2_3_scaffold_86_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9364..11811
DNA (2448bp) protein (816aa)
Negative regulator of genetic competence ClpC/MecB n=167 Tax=Clostridium difficile RepID=T3IQT9_CLODC rbh
clpC; class III stress response-related ATPase
Negative regulator of genetic competence ClpC/MecB {ECO:0000313|EMBL:EHJ32582.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sour
NECEvent2014_2_3_scaffold_86_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11991..13364
DNA (1374bp) protein (458aa)
radA; DNA repair protein (EC:2.1.1.63)
DNA repair protein radA n=160 Tax=Clostridium difficile RepID=T3IME1_CLODC rbh
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium dif
NECEvent2014_2_3_scaffold_86_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13367..14437
DNA (1071bp) protein (357aa)
DNA integrity scanning protein DisA n=174 Tax=Clostridium difficile RepID=DISA_CLOD6 rbh
DNA integrity scanning protein DisA
DNA integrity scanning protein DisA {ECO:0000255|HAMAP-Rule:MF_01438}; Cyclic di-AMP synthase {ECO:0000255|HAMAP-Rule:MF_01438}; Short=c-di-AMP synthase {ECO:0000255|HAMAP-Rule:MF_01438};; Diadenylate
NECEvent2014_2_3_scaffold_86_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14526..15620
DNA (1095bp) protein (365aa)
PIN domain protein n=6 Tax=Clostridium difficile RepID=T3IJH8_CLODC rbh
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CAJ66843.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_86_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15749..17926
DNA (2178bp) protein (726aa)
Putative membrane protein n=6 Tax=Clostridium difficile RepID=T3IPJ8_CLODC rbh
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CAJ66844.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_86_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18112..18957)
DNA (846bp) protein (282aa)
AraC family transcriptional regulator {ECO:0000313|EMBL:CKH92458.1}; EC=2.1.1.- {ECO:0000313|EMBL:CKH92458.1};; CD00310 protein {ECO:0000313|EMBL:CDF47134.1}; Transcriptional regulator, AraC family {E
Transcriptional regulator, AraC family n=133 Tax=Clostridium difficile RepID=Q18CB4_CLOD6 rbh
Transcriptional regulator, AraC family
NECEvent2014_2_3_scaffold_86_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19174..20340
DNA (1167bp) protein (389aa)
putative beta-glucosidase (EC:3.2.1.58)
Putative beta-glucosidase {ECO:0000313|EMBL:CAJ66846.1}; EC=3.2.1.58 {ECO:0000313|EMBL:CAJ66846.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pepto
Cellulase family protein n=7 Tax=Clostridium difficile RepID=T3IJG9_CLODC rbh
NECEvent2014_2_3_scaffold_86_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20362..22008
DNA (1647bp) protein (549aa)
Putative glycoside hydrolase {ECO:0000313|EMBL:CEJ96535.1}; EC=3.2.1.- {ECO:0000313|EMBL:CEJ96535.1};; Xylan 1%2C4-beta-xylosidase {ECO:0000313|EMBL:CKH92516.1}; EC=3.2.1.37 {ECO:0000313|EMBL:CKH92516
putative glycoside hydrolase (EC:3.2.1.-)
Xylan beta-1,4-xylosidase n=119 Tax=Clostridium difficile RepID=T3IPI8_CLODC rbh
NECEvent2014_2_3_scaffold_86_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22105..23478
DNA (1374bp) protein (458aa)
Sugar (Glycoside-Pentoside-Hexuronide) transporter domain protein n=7 Tax=Clostridium difficile RepID=T2U6U7_CLODI rbh
putative xylose transporter, sodium:galactosidesymporter family
Putative xylose transporter, sodium:galactosidesymporter family {ECO:0000313|EMBL:CEJ96536.1}; Xylose transporter {ECO:0000313|EMBL:CKH92556.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; C
NECEvent2014_2_3_scaffold_86_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23919..24872
DNA (954bp) protein (318aa)
Bacterial regulatory s, crp family protein n=190 Tax=Clostridium difficile RepID=C9XIE7_CLODC rbh
transcriptional regulator
Sugar-binding domain protein {ECO:0000313|EMBL:EHJ34500.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium d
NECEvent2014_2_3_scaffold_86_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24910..25872
DNA (963bp) protein (321aa)
Acetoin dehydrogenase E1 component (TPP-dependent alpha subunit) {ECO:0000313|EMBL:CCL32550.1}; EC=1.2.4.1 {ECO:0000313|EMBL:CCL32550.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clos
Acetoin:2,6-dichlorophenolindophenol oxidoreductase alpha subunit n=200 Tax=Clostridium difficile RepID=C9XIE8_CLODC rbh
acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha
NECEvent2014_2_3_scaffold_86_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25897..26883
DNA (987bp) protein (329aa)
Acetoin dehydrogenase E1 component (TPP-dependent beta subunit) {ECO:0000313|EMBL:CAJ66851.1}; EC=1.2.4.1 {ECO:0000313|EMBL:CAJ66851.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostr
Acetoin:2,6-dichlorophenolindophenol oxidoreductase beta subunit n=151 Tax=Clostridium difficile RepID=C9XIE9_CLODC rbh
acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta
NECEvent2014_2_3_scaffold_86_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26896..27942
DNA (1047bp) protein (349aa)
acoC; Acetoin dehydrogenase E2 component(dihydrolipoamide acetyltransferase) (EC:2.3.1.12)
Acetoin dehydrogenase E2 component (Dihydrolipoamide acetyltransferase) {ECO:0000313|EMBL:CAJ66852.1}; EC=2.3.1.12 {ECO:0000313|EMBL:CAJ66852.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridi
2-oxoacid dehydrogenases acyltransferase family protein n=81 Tax=Clostridium difficile RepID=T3IPE8_CLODC rbh
NECEvent2014_2_3_scaffold_86_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28109..29839
DNA (1731bp) protein (577aa)
acoL; Acetoin dehydrogenase E3 component(dihydrolipoamide dehydrogenase) (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae;
Dihydrolipoyl dehydrogenase n=52 Tax=Clostridium difficile RepID=T3IQP3_CLODC rbh
NECEvent2014_2_3_scaffold_86_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30257..33205
DNA (2949bp) protein (983aa)
Sigma-54 interaction domain protein n=6 Tax=Clostridium difficile RepID=T3IKL3_CLODC rbh
Transcription antiterminator, PTS operonregulator
Transcription antiterminator {ECO:0000313|EMBL:CKH92784.1}; Transcription antiterminator, PTS operonregulator {ECO:0000313|EMBL:CEJ96542.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clost
Displaying items 1-30 of 49 in total

View Taxonomy