ggKbase home page

NECEvent2014_2_3_scaffold_104

Alias: 172_003_scaffold_104

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_104_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(256..1611)
DNA (1356bp) protein (452aa)
UPF0210 protein HMPREF1122_00891 n=169 Tax=Clostridium difficile RepID=G6B4X2_CLODI rbh
hypothetical protein
UPF0210 protein HMPREF1122_00891 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclost
NECEvent2014_2_3_scaffold_104_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1637..1906)
DNA (270bp) protein (90aa)
UPF0237 protein CD196_2464 n=219 Tax=Clostridium difficile RepID=C9XMZ3_CLODC
hypothetical protein
UPF0237 protein BN165_1340034 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostri
NECEvent2014_2_3_scaffold_104_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2196..4181)
DNA (1986bp) protein (662aa)
Uncharacterized protein n=15 Tax=Clostridium difficile RepID=T2THZ7_CLODI rbh
Uncharacterized protein {ECO:0000313|EMBL:CDS88571.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficil
conserved hypothetical protein
NECEvent2014_2_3_scaffold_104_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4364..5839)
DNA (1476bp) protein (492aa)
Stage IV sporulation protein A {ECO:0000256|PIRNR:PIRNR007466}; EC=3.6.1.3 {ECO:0000256|PIRNR:PIRNR007466};; Coat morphogenetic protein SpoIVA {ECO:0000256|PIRNR:PIRNR007466}; TaxID=1151268 species="B
Stage IV sporulation protein A n=192 Tax=Clostridium difficile RepID=SP4A_CLOD6 rbh
stage IV sporulation protein A
NECEvent2014_2_3_scaffold_104_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6011..7306)
DNA (1296bp) protein (432aa)
Sugar (And other) transporter family protein n=8 Tax=Clostridium difficile RepID=T3GGL9_CLODC rbh
Sugar (And other) transporter family protein {ECO:0000313|EMBL:EQE60621.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="P
hypothetical protein
NECEvent2014_2_3_scaffold_104_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7490..8935)
DNA (1446bp) protein (482aa)
Amino acid permease family protein n=6 Tax=Clostridium difficile RepID=C9XMZ7_CLODC rbh
amino acid permease family protein
Amino acid permease family protein {ECO:0000313|EMBL:CBE05898.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostri
NECEvent2014_2_3_scaffold_104_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8951..10090)
DNA (1140bp) protein (380aa)
Cobalt dependent x-pro dipeptidase n=128 Tax=Clostridium difficile RepID=C9XMZ8_CLODC rbh
cobalt dependent x-pro dipeptidase
Metallopeptidase M24 family protein {ECO:0000313|EMBL:EQE60581.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclost
NECEvent2014_2_3_scaffold_104_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10409..11059
DNA (651bp) protein (217aa)
Bacterial regulatory s, tetR family protein n=138 Tax=Clostridium difficile RepID=T3GD35_CLODC rbh
Bacterial regulatory s, tetR family protein {ECO:0000313|EMBL:EQE60598.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pe
transcriptional regulator
NECEvent2014_2_3_scaffold_104_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11216..12235)
DNA (1020bp) protein (340aa)
gpsA; Glycerol-3-phosphate dehydrogenase (NAD(P)+)(NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=131 Tax=Clostridium difficile RepID=Q182W5_CLOD6 rbh
NECEvent2014_2_3_scaffold_104_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12266..12880)
DNA (615bp) protein (205aa)
Glycerol-3-phosphate acyltransferase n=5 Tax=Clostridium difficile RepID=T3GGM2_CLODC rbh
hypothetical protein
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:000025
NECEvent2014_2_3_scaffold_104_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12915..14240)
DNA (1326bp) protein (442aa)
GTPase Der n=208 Tax=Clostridium difficile RepID=C9XN02_CLODC rbh
engA; GTP-binding protein EngA
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostr
NECEvent2014_2_3_scaffold_104_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14268..15608)
DNA (1341bp) protein (447aa)
Putative FeS-containing Cyanobacterial-specific oxidoreductase n=1 Tax=Clostridium difficile 70-100-2010 RepID=G6BZV8_CLODI rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE05909.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_104_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15834..16034)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Clostridium difficile 6042 RepID=T3KJ38_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK99098.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_104_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16036..16968)
DNA (933bp) protein (311aa)
YIEGIA family protein n=186 Tax=Clostridium difficile RepID=T3GGI9_CLODC rbh
putative spore envelope protein
Uncharacterized protein {ECO:0000313|EMBL:CCL22991.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_104_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17013..17945)
DNA (933bp) protein (311aa)
YIEGIA family protein n=185 Tax=Clostridium difficile RepID=T3GH33_CLODC rbh
putative membrane protein
YIEGIA family protein {ECO:0000313|EMBL:EQE60582.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffici
NECEvent2014_2_3_scaffold_104_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18000..19289)
DNA (1290bp) protein (430aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclost
Sensory box protein n=200 Tax=Clostridium difficile RepID=C9XN07_CLODC rbh
two-component sensor histidine kinase
NECEvent2014_2_3_scaffold_104_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19318..20010)
DNA (693bp) protein (231aa)
Transcriptional regulatory family protein n=220 Tax=Clostridium difficile RepID=C9XN08_CLODC rbh
two-component response regulator
Transcriptional regulatory family protein {ECO:0000313|EMBL:EQI80011.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pept
NECEvent2014_2_3_scaffold_104_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20025..20783)
DNA (759bp) protein (253aa)
Multi-copper polyphenol oxidoreductase laccase family protein n=166 Tax=Clostridium difficile RepID=T3GBZ7_CLODC rbh
conserved hypothetical protein
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_104_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20783..21244)
DNA (462bp) protein (154aa)
Transcriptional repressor NrdR n=194 Tax=Clostridium difficile RepID=NRDR_CLOD6 rbh
nrdR; Transcriptional regulator, repressor NrdRfamily
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclo
NECEvent2014_2_3_scaffold_104_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21266..21529)
DNA (264bp) protein (88aa)
Sporulation , YlmC/YmxH family protein n=221 Tax=Clostridium difficile RepID=C9XN11_CLODC
hypothetical protein
Putative sporulation protein {ECO:0000313|EMBL:CCK99105.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_104_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21633..22406)
DNA (774bp) protein (258aa)
RNA polymerase sigma factor n=220 Tax=Clostridium difficile RepID=C9XN12_CLODC rbh
sigG; sporulation sigma factor SigG
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_104_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22498..23220)
DNA (723bp) protein (241aa)
RNA polymerase sigma factor n=205 Tax=Clostridium difficile RepID=C9XN13_CLODC rbh
sigE; sporulation sigma factor SigE
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_104_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23245..24117)
DNA (873bp) protein (291aa)
Sporulation sigma-E factor-processing peptidase {ECO:0000256|PIRNR:PIRNR018571}; EC=3.4.23.- {ECO:0000256|PIRNR:PIRNR018571};; Membrane-associated aspartic protease {ECO:0000256|PIRNR:PIRNR018571}; St
Sigma-E processing peptidase SpoIIGA n=65 Tax=Clostridium difficile RepID=G6B4Z4_CLODI rbh
spoIIGA; sporulation sigma-E factor processing peptidase
NECEvent2014_2_3_scaffold_104_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24407..25681)
DNA (1275bp) protein (425aa)
Bacterial extracellular solute-binding family protein n=199 Tax=Clostridium difficile RepID=C9XN15_CLODC rbh
extracellular solute-binding protein
Bacterial extracellular solute-binding family protein {ECO:0000313|EMBL:EQE60578.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;"
NECEvent2014_2_3_scaffold_104_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25965..27125)
DNA (1161bp) protein (387aa)
Cell division protein FtsZ n=211 Tax=Clostridium difficile RepID=C9XN16_CLODC rbh
ftsZ; cell division protein
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostrid
NECEvent2014_2_3_scaffold_104_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27312..27665)
DNA (354bp) protein (118aa)
Uncharacterized protein n=207 Tax=Clostridium difficile RepID=T2TB43_CLODI
sbp; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG75690.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_104_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27764..28438)
DNA (675bp) protein (225aa)
Uncharacterized protein n=86 Tax=Clostridium difficile RepID=T3GD16_CLODC rbh
Uncharacterized protein {ECO:0000313|EMBL:CCL23004.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
conserved hypothetical protein
NECEvent2014_2_3_scaffold_104_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28443..29141)
DNA (699bp) protein (233aa)
Uncharacterized protein n=165 Tax=Clostridium difficile RepID=Q182Y3_CLOD6 rbh
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG76740.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_104_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29164..29868)
DNA (705bp) protein (235aa)
POTRA domain, FtsQ-type family protein n=8 Tax=Clostridium difficile RepID=T2TWB7_CLODI rbh
putative cell division protein Fts-Q type
Putative cell division protein Fts-Q type {ECO:0000313|EMBL:CAJ69536.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pepto
NECEvent2014_2_3_scaffold_104_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30174..31400)
DNA (1227bp) protein (409aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=165 Tax=Clostridium difficile RepID=MURG_CLOD6 rbh
UDP-N-acetylglucosamine--N-acetylmuramyl-(penta peptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
Displaying items 1-30 of 41 in total

View Taxonomy