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NECEvent2014_2_3_scaffold_105

Alias: 172_003_scaffold_105

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_105_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

265..1239
DNA (975bp) protein (325aa)
Uncharacterized protein n=45 Tax=Clostridium difficile RepID=T3G7F8_CLODC rbh
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CAJ69935.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_105_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1355..2416)
DNA (1062bp) protein (354aa)
Transglutaminase-like superfamily protein n=102 Tax=Clostridium difficile RepID=T3G6M6_CLODC rbh
conserved hypothetical protein
Transglutaminase-like superfamily protein {ECO:0000313|EMBL:EQG74407.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pept
NECEvent2014_2_3_scaffold_105_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3025..3876)
DNA (852bp) protein (284aa)
Helix-turn-helix domain, rpiR family protein n=180 Tax=Clostridium difficile RepID=T3GAU0_CLODC rbh
Transcriptional regulator, RpiR family
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:CCL23423.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptocl
NECEvent2014_2_3_scaffold_105_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3893..4813)
DNA (921bp) protein (307aa)
BadF/BadG/BcrA/BcrD ATPase family protein n=149 Tax=Clostridium difficile RepID=T3GBQ4_CLODC rbh
putative ATPase, BadF/BadG/BcrA/BcrD type
Acyl-CoA reductase/dehydratase {ECO:0000313|EMBL:CKG85523.1}; Putative ATPase, BadF/BadG/BcrA/BcrD type {ECO:0000313|EMBL:CDS88860.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridial
NECEvent2014_2_3_scaffold_105_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4923..5837)
DNA (915bp) protein (305aa)
murQ; N-acetylmuramic acid 6-phosphate etherase (EC:4.2.-.-)
N-acetylmuramic acid 6-phosphate etherase {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795}; Short=MurNAc-6-P etherase {ECO:0000256|HAMAP-Rule:MF_00068};; EC=4.2.1.126 {ECO:0000256|HAMA
N-acetylmuramic acid 6-phosphate etherase n=193 Tax=Clostridium difficile RepID=MURQ_CLOD6 rbh
NECEvent2014_2_3_scaffold_105_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5917..7014)
DNA (1098bp) protein (366aa)
Uncharacterized protein n=28 Tax=Clostridium difficile RepID=T3G7G3_CLODC rbh
conserved hypothetical protein
Outer surface protein {ECO:0000313|EMBL:CKG85453.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ99686.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae;
NECEvent2014_2_3_scaffold_105_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7247..8593)
DNA (1347bp) protein (449aa)
PTS system, lactose/cellobiose IIC component family protein n=115 Tax=Clostridium difficile RepID=T3G6M9_CLODC rbh
PTS system, lactose/cellobiose-family IICmembrane component
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_105_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8682..8990)
DNA (309bp) protein (103aa)
PTS system, Lactose/Cellobiose specific IIB subunit n=108 Tax=Clostridium difficile RepID=T3GAU6_CLODC
PTS system, lactose/cellobiose-family IIBsubunit
PTS system, Lactose/Cellobiose specific IIB subunit {ECO:0000313|EMBL:EQE59954.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" so
NECEvent2014_2_3_scaffold_105_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9252..9650)
DNA (399bp) protein (133aa)
Uncharacterized protein n=149 Tax=Clostridium difficile RepID=G6BDQ7_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQG74450.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium dif
hypothetical protein
NECEvent2014_2_3_scaffold_105_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9652..10803)
DNA (1152bp) protein (384aa)
anmK; Anhydro-N-acetylmuramic acid kinase (AnhMurNAckinase) (EC:2.7.1.-)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {
Anhydro-N-acetylmuramic acid kinase n=26 Tax=Clostridium difficile RepID=ANMK_CLOD6 rbh
NECEvent2014_2_3_scaffold_105_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11243..12262)
DNA (1020bp) protein (340aa)
Two-component sensor histidine kinase {ECO:0000313|EMBL:CEJ99691.1}; Two-component system sensor histidine kinase {ECO:0000313|EMBL:CKG85318.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CKG85318.1};; TaxID=1496
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein n=38 Tax=Clostridium difficile RepID=T3GBN4_CLODC rbh
Two-component sensor histidine kinase
NECEvent2014_2_3_scaffold_105_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12256..12936)
DNA (681bp) protein (227aa)
Transcriptional regulatory family protein n=114 Tax=Clostridium difficile RepID=T3G9A7_CLODC rbh
Two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CCL23432.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostrid
NECEvent2014_2_3_scaffold_105_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13088..14995)
DNA (1908bp) protein (636aa)
FtsX-like permease family protein n=75 Tax=Clostridium difficile RepID=T3G7E1_CLODC rbh
ABC-type transport system, permease {ECO:0000313|EMBL:CAJ69947.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostr
ABC-type transport system, permease
NECEvent2014_2_3_scaffold_105_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14996..15748)
DNA (753bp) protein (251aa)
ABC-type transport system, ATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=48 Tax=Clostridium difficile RepID=T3G6L2_CLODC rbh
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EHJ34465.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclost
NECEvent2014_2_3_scaffold_105_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16066..17217)
DNA (1152bp) protein (384aa)
Transporter, Major Facilitator Superfamily (MFS) n=16 Tax=Clostridium difficile RepID=Q184P5_CLOD6 rbh
Transporter, Major Facilitator Superfamily(MFS)
Transporter, Major Facilitator Superfamily (MFS) {ECO:0000313|EMBL:CAJ69949.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source
NECEvent2014_2_3_scaffold_105_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17220..17687)
DNA (468bp) protein (156aa)
PTS system, alpha-glucoside-specific IIA component n=183 Tax=Clostridium difficile RepID=Q184P4_CLOD6 rbh
PTS system alpha-glucoside-specific transporter subunit IIA
PTS system, alpha-glucoside-specific IIA component {ECO:0000313|EMBL:CCL23436.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sou
NECEvent2014_2_3_scaffold_105_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17701..18189)
DNA (489bp) protein (163aa)
Uncharacterized protein n=37 Tax=Clostridium difficile RepID=G6BDP9_CLODI rbh
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CAJ69951.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_105_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18203..19534)
DNA (1332bp) protein (444aa)
Phospho-alpha-glucosidase (EC:3.2.1.122)
Phospho-alpha-glucosidase {ECO:0000313|EMBL:CCL23438.1}; EC=3.2.1.122 {ECO:0000313|EMBL:CCL23438.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pep
Maltose-6'-phosphate glucosidase n=94 Tax=Clostridium difficile RepID=T3GBF1_CLODC rbh
NECEvent2014_2_3_scaffold_105_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19548..21113)
DNA (1566bp) protein (522aa)
PTS system, alpha-glucoside-specific IIBC component {ECO:0000313|EMBL:CAJ69953.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CAJ69953.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pe
PTS system, alpha-glucoside-specific IIBCcomponent (EC:2.7.1.69)
PTS system, alpha-glucoside-specific IIBC component domain protein n=26 Tax=Clostridium difficile RepID=T3G930_CLODC rbh
NECEvent2014_2_3_scaffold_105_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21282..22067)
DNA (786bp) protein (262aa)
Helix-turn-helix domain, rpiR family protein n=56 Tax=Clostridium difficile RepID=T3G758_CLODC rbh
Transcriptional regulator, RpiR family
Phosphosugar-binding transcriptional regulator {ECO:0000313|EMBL:CKG85021.1}; Transcriptional regulator, RpiR family {ECO:0000313|EMBL:CEJ99700.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia
NECEvent2014_2_3_scaffold_105_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22234..23433)
DNA (1200bp) protein (400aa)
Peptidase S41 family protein n=73 Tax=Clostridium difficile RepID=T3G6C7_CLODC rbh
putative peptidase, S41 family
Putative peptidase, S41 family {ECO:0000313|EMBL:CEJ99701.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium d
NECEvent2014_2_3_scaffold_105_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23955..25319)
DNA (1365bp) protein (455aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=645463 species="Bacteria; Firmicu
Xylose isomerase n=6 Tax=Clostridium difficile RepID=C9XQA5_CLODC rbh
xylA; xylose isomerase
NECEvent2014_2_3_scaffold_105_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25388..26938)
DNA (1551bp) protein (517aa)
xylB; xylulose kinase (EC:2.7.1.17)
Xylulokinase n=1 Tax=Clostridium difficile 050-P50-2011 RepID=G6BDP3_CLODI rbh
Xylulokinase {ECO:0000313|EMBL:EHJ34456.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50
NECEvent2014_2_3_scaffold_105_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27146..28306
DNA (1161bp) protein (387aa)
ROK family protein n=90 Tax=Clostridium difficile RepID=T3GBD7_CLODC rbh
xylR; xylose repressor
ROK family protein {ECO:0000313|EMBL:EHJ32439.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 0
NECEvent2014_2_3_scaffold_105_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28462..28866)
DNA (405bp) protein (135aa)
PTS system, xyloside-specific IIA component n=186 Tax=Clostridium difficile RepID=Q184Q3_CLOD6
xynA; PTS system, xyloside-specific IIA component
PTS system fructose IIA component family protein {ECO:0000313|EMBL:EQG74418.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sourc
NECEvent2014_2_3_scaffold_105_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28887..29381)
DNA (495bp) protein (165aa)
PTS system, IIb component n=203 Tax=Clostridium difficile RepID=C9XQA9_CLODC rbh
PTS system transporter subunit IIB
PTS system sorbose subfamily IIB component {ECO:0000313|EMBL:EHJ34453.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pept
NECEvent2014_2_3_scaffold_105_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29389..30198)
DNA (810bp) protein (270aa)
PTS system mannose/fructose/sorbose IID component family protein n=211 Tax=Clostridium difficile RepID=C9XQB0_CLODC rbh
PTS system transporter subunit IID
PTS system mannose/fructose/sorbose IID component family protein {ECO:0000313|EMBL:EQE59930.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclos
NECEvent2014_2_3_scaffold_105_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30191..30970)
DNA (780bp) protein (260aa)
PTS system sorbose-specific iic component family protein n=206 Tax=Clostridium difficile RepID=C9XQD9_CLODC rbh
PTS system transporter subunit IIC
PTS system sorbose-specific iic component family protein {ECO:0000313|EMBL:EQE59926.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.
NECEvent2014_2_3_scaffold_105_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30970..33048)
DNA (2079bp) protein (693aa)
Glycosyl hydrolase n=191 Tax=Clostridium difficile RepID=C9XQE0_CLODC rbh
Glycosyl hydrolases 31 family protein {ECO:0000313|EMBL:EQE59957.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclo
glycosyl hydrolase
NECEvent2014_2_3_scaffold_105_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33847..34368)
DNA (522bp) protein (174aa)
Uncharacterized protein n=31 Tax=Clostridium difficile RepID=T3GA74_CLODC rbh
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ69964.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
Displaying items 1-30 of 41 in total

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