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NECEvent2014_2_3_scaffold_150

Alias: 172_003_scaffold_150

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_150_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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347..1708
DNA (1362bp) protein (454aa)
MATE efflux family protein n=5 Tax=Clostridium difficile RepID=T2TVT0_CLODI rbh
putative drug/sodium antiporter, MATE family
Putative drug/sodium antiporter, MATE family {ECO:0000313|EMBL:CAJ69774.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pe
NECEvent2014_2_3_scaffold_150_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1799..2503
DNA (705bp) protein (235aa)
GntR-family transcriptional regulator n=143 Tax=Clostridium difficile RepID=C9XPU7_CLODC rbh
GntR-family transcriptional regulator
Iron dependent repressor, N-terminal DNA binding domain protein {ECO:0000313|EMBL:EQG74573.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclost
NECEvent2014_2_3_scaffold_150_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2703..3014
DNA (312bp) protein (104aa)
PTS system, cellobiose-specific IIB component {ECO:0000313|EMBL:CCL31192.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CCL31192.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptost
Lichenan-specific phosphotransferase enzyme IIB component n=201 Tax=Clostridium difficile RepID=C9XPU6_CLODC
PTS system lichenan-specific transporter subunit IIB
NECEvent2014_2_3_scaffold_150_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3036..4349
DNA (1314bp) protein (438aa)
PTS system, lactose/cellobiose IIC component family protein n=185 Tax=Clostridium difficile RepID=C9XPU5_CLODC rbh
PTS system lichenan-specific transporter subunit IIC
PTS system, cellobiose-specific IIC component {ECO:0000313|EMBL:CAJ69771.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="P
NECEvent2014_2_3_scaffold_150_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4426..5736
DNA (1311bp) protein (437aa)
celF; cellobiose-6-phosphate hydrolase (EC:3.2.1.86) rbh
6-phospho-beta-glucosidase {ECO:0000313|EMBL:CKH90132.1}; EC=3.2.1.86 {ECO:0000313|EMBL:CKH90132.1};; Cellobiose-6-phosphate hydrolase, family 4 {ECO:0000313|EMBL:CEJ99512.1}; EC=3.2.1.86 {ECO:0000313
Cellobiose-6-phosphate hydrolase, family 4 n=6 Tax=Clostridium difficile RepID=Q183W7_CLOD6 rbh
NECEvent2014_2_3_scaffold_150_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5762..6493
DNA (732bp) protein (244aa)
YdjC-like family protein n=6 Tax=Clostridium difficile RepID=T3G865_CLODC rbh
celG; putative cellobiose-phosphate degrading protein
Putative cellobiose-phosphate degrading protein {ECO:0000313|EMBL:CEJ99511.1}; YdjC family protein {ECO:0000313|EMBL:CKH90095.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; P
NECEvent2014_2_3_scaffold_150_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6506..6823
DNA (318bp) protein (106aa)
PTS system, cellobiose-specific IIA component {ECO:0000313|EMBL:CCL31188.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CCL31188.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptost
PTS system, Lactose/Cellobiose specific IIA subunit n=219 Tax=Clostridium difficile RepID=C9XPU2_CLODC
PTS system lichenan-specific transporter subunit IIA
NECEvent2014_2_3_scaffold_150_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6935..7399)
DNA (465bp) protein (155aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=T3GAZ1_CLODC rbh
hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKH90049.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ99509.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae
NECEvent2014_2_3_scaffold_150_9
unknown

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comp(7377..7469)
DNA (93bp) protein (31aa)

This feature has no annotations

NECEvent2014_2_3_scaffold_150_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7669..8607
DNA (939bp) protein (313aa)
Periplasmic binding family protein n=73 Tax=Clostridium difficile RepID=T3GDC8_CLODC rbh
fhuD; ferrichrome-specific ABC transportersubstrate-binding protein
ABC-type transport system, ferrichrome-specific extracellular solute-binding protein {ECO:0000313|EMBL:CCL23253.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostrepto
NECEvent2014_2_3_scaffold_150_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8735..9748
DNA (1014bp) protein (338aa)
FecCD transport family protein n=9 Tax=Clostridium difficile RepID=T3GCI5_CLODC rbh
fhuB; ferrichrome-specific ABC transporter permease
ABC-type transport system, ferrichrome-specificpermease {ECO:0000313|EMBL:CEJ99507.1}; Ferrichrome ABC transporter permease {ECO:0000313|EMBL:CKH89971.1}; TaxID=1496 species="Bacteria; Firmicutes; Clo
NECEvent2014_2_3_scaffold_150_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9754..10776
DNA (1023bp) protein (341aa)
FecCD transport family protein n=152 Tax=Clostridium difficile RepID=C9XPT8_CLODC rbh
fhuG; ferrichrome ABC transporter permease
ABC-type transport system, ferrichrome-specific permease {ECO:0000313|EMBL:CCL31184.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.
NECEvent2014_2_3_scaffold_150_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10791..11573
DNA (783bp) protein (261aa)
fhuC; ferrichrome-specific ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC-type transport system, ferrichrome-specificATP-binding protein {ECO:0000313|EMBL:CEJ99505.1}; EC=3.6.3.- {ECO:0000313|EMBL:CEJ99505.1};; Ferrichrome ABC transporter ATP-binding protein {ECO:000031
ABC transporter family protein n=26 Tax=Clostridium difficile RepID=T3G998_CLODC rbh
NECEvent2014_2_3_scaffold_150_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11585..12925
DNA (1341bp) protein (447aa)
MATE efflux family protein n=91 Tax=Clostridium difficile RepID=T3GAY6_CLODC rbh
putative drug/sodium antiporter, MATE family
Drug/sodium antiporter {ECO:0000313|EMBL:CKH89884.1}; Putative drug/sodium antiporter, MATE family {ECO:0000313|EMBL:CEJ99504.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; P
NECEvent2014_2_3_scaffold_150_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13020..15299)
DNA (2280bp) protein (760aa)
Diguanylate cyclase domain protein n=19 Tax=Clostridium difficile RepID=T3R2X9_CLODI rbh
putative signaling protein
Putative signaling protein {ECO:0000313|EMBL:CEJ99503.1}; Signaling protein {ECO:0000313|EMBL:CKH89849.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; P
NECEvent2014_2_3_scaffold_150_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15636..16799)
DNA (1164bp) protein (388aa)
uxaA; D-galactate dehydratase/Altronate hydrolase (EC:4.2.1.7)
Altronate hydrolase {ECO:0000313|EMBL:CKH89810.1}; EC=4.2.1.42 {ECO:0000313|EMBL:CKH89810.1};; D-galactate dehydratase/Altronate hydrolase {ECO:0000313|EMBL:CEJ99502.1}; EC=4.2.1.7 {ECO:0000313|EMBL:C
D-galactarate dehydratase / Altronate hydrolase family protein n=92 Tax=Clostridium difficile RepID=T3GCI1_CLODC rbh
NECEvent2014_2_3_scaffold_150_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16812..17087)
DNA (276bp) protein (92aa)
Altronate hydrolase (N-terminus) n=146 Tax=Clostridium difficile RepID=C9XPT3_CLODC
altronate hydrolase (N-terminus)
Putative N-terminus region of carbohydrate hydrolase, SAF domain {ECO:0000313|EMBL:CCL31179.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclos
NECEvent2014_2_3_scaffold_150_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17108..18082)
DNA (975bp) protein (325aa)
2-keto-3-deoxygluconate permease 1 n=45 Tax=Clostridium difficile RepID=Q183V7_CLOD6 rbh
kdgT1; 2-keto-3-deoxygluconate permease 1
2-keto-3-deoxygluconate permease family protein {ECO:0000313|EMBL:EQG74332.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source
NECEvent2014_2_3_scaffold_150_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18353..20245)
DNA (1893bp) protein (631aa)
Sensory box protein n=6 Tax=Clostridium difficile RepID=T3GAY1_CLODC rbh
Transcriptional regulator, sigma-54-dependent {ECO:0000313|EMBL:CAJ69757.2}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="P
Transcriptional regulator, sigma-54-dependent
NECEvent2014_2_3_scaffold_150_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20443..21657)
DNA (1215bp) protein (405aa)
Oxidoreductase {ECO:0000313|EMBL:CKH89689.1}; EC=1.4.3.- {ECO:0000313|EMBL:CKH89689.1};; Putative oxidoreductase {ECO:0000313|EMBL:CEJ99498.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Cl
FAD binding domain protein n=6 Tax=Clostridium difficile RepID=T3GCJ5_CLODC rbh
putative oxidoreductase
NECEvent2014_2_3_scaffold_150_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21901..23283
DNA (1383bp) protein (461aa)
Modulator of DNA gyrase family protein n=26 Tax=Clostridium difficile RepID=C9XPS9_CLODC rbh
regulatory protease
Putative regulatory protease, U62 family {ECO:0000313|EMBL:CAJ69755.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoc
NECEvent2014_2_3_scaffold_150_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23295..24644
DNA (1350bp) protein (450aa)
Modulator of DNA gyrase family protein n=37 Tax=Clostridium difficile RepID=T3G9C0_CLODC rbh
putative modulator of DNA gyrase, peptidase U62
Putative modulator of DNA gyrase, peptidase U62 {ECO:0000313|EMBL:CEJ99496.1}; Regulatory protease {ECO:0000313|EMBL:CKH89630.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; P
NECEvent2014_2_3_scaffold_150_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24794..25327
DNA (534bp) protein (178aa)
Ferritin-like domain protein n=161 Tax=Clostridium difficile RepID=T3GB05_CLODC rbh
putative bacterioferritin
Putative bacterioferritin {ECO:0000313|EMBL:CCL23241.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium dif
NECEvent2014_2_3_scaffold_150_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25411..26220
DNA (810bp) protein (270aa)
putative hydrolase (EC:3.1.-.-)
Phospholipase/Carboxylesterase family protein n=166 Tax=Clostridium difficile RepID=T3GDE4_CLODC rbh
Phospholipase/Carboxylesterase family protein {ECO:0000313|EMBL:EQI78244.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="
NECEvent2014_2_3_scaffold_150_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26631..28676
DNA (2046bp) protein (682aa)
AAA domain family protein n=11 Tax=Clostridium difficile RepID=T3GCK0_CLODC rbh
Transcriptional regulator, sigma-54-dependent
Sigma-54-dependent transcriptional regulator {ECO:0000313|EMBL:CKH89537.1}; Transcriptional regulator, sigma-54-dependent {ECO:0000313|EMBL:CEJ99493.1}; TaxID=1496 species="Bacteria; Firmicutes; Clost
NECEvent2014_2_3_scaffold_150_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28937..30136
DNA (1200bp) protein (400aa)
Membrane dipeptidase family protein n=104 Tax=Clostridium difficile RepID=T3G873_CLODC rbh
putative peptidase, M19 family
Putative peptidase, M19 family {ECO:0000313|EMBL:CCL23238.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridiu
NECEvent2014_2_3_scaffold_150_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30188..30883
DNA (696bp) protein (232aa)
Uncharacterized protein n=210 Tax=Clostridium difficile RepID=G6B4A0_CLODI rbh
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL31164.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium dif
NECEvent2014_2_3_scaffold_150_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30900..31577
DNA (678bp) protein (226aa)
Uncharacterized protein n=182 Tax=Clostridium difficile RepID=G6B499_CLODI rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE60174.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_150_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31688..33289
DNA (1602bp) protein (534aa)
Putative D-aminoacylase {ECO:0000313|EMBL:CAJ69747.1}; EC=3.5.1.81 {ECO:0000313|EMBL:CAJ69747.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptocl
putative D-aminoacylase (EC:3.5.1.81)
Amidohydrolase family protein n=9 Tax=Clostridium difficile RepID=T3GDD8_CLODC rbh
Displaying 29 items

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