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NECEvent2014_2_3_scaffold_179

Alias: 172_003_scaffold_179

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_179_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(502..2406)
DNA (1905bp) protein (635aa)
Calcineurin-like phosphoesterase family protein n=4 Tax=Clostridium difficile RepID=T3I9Q9_CLODC rbh
Nucleotide phosphodiesterase {ECO:0000313|EMBL:CKH62672.1}; Putative nucleotide phosphodiesterase {ECO:0000313|EMBL:CEJ97234.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pe
nucleotide phosphodiesterase
NECEvent2014_2_3_scaffold_179_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3040..3933)
DNA (894bp) protein (298aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=Q180J3_CLOD6 rbh
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ70247.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
NECEvent2014_2_3_scaffold_179_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3934..4608)
DNA (675bp) protein (225aa)
Putative membrane protein n=3 Tax=Clostridium difficile RepID=Q180J0_CLOD6 rbh
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CAJ70246.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_179_4
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4865..5179
DNA (315bp) protein (105aa)
Uncharacterized protein n=6 Tax=Clostridiales RepID=U4B4N3_CLODI
putative conjugative transposon protein DUF961family Tn916-like, CTn6-Orf24
Uncharacterized protein {ECO:0000313|EMBL:EDP15495.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL
NECEvent2014_2_3_scaffold_179_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5201..5578
DNA (378bp) protein (126aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=T4F9L2_CLODI
putative conjugative transposon proteinTn916-like, CTn6-Orf23
Conjugative transposon protein {ECO:0000313|EMBL:CKG76435.1}; Putative conjugative transposon proteinTn916-like, CTn6-Orf23 {ECO:0000313|EMBL:CEK00001.1}; TaxID=1496 species="Bacteria; Firmicutes; Clo
NECEvent2014_2_3_scaffold_179_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5614..7011
DNA (1398bp) protein (466aa)
FtsK/SpoIIIE family protein n=3 Tax=Clostridium difficile RepID=T4FA65_CLODI rbh
putative cell-division FtsK/SpoIIIE-familyprotein Tn916-like, CTn6-Orf22
Putative cell-division FtsK/SpoIIIE-family protein Tn916-like, CTn6-Orf22 {ECO:0000313|EMBL:CAJ70243.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; P
NECEvent2014_2_3_scaffold_179_7
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7349..8386
DNA (1038bp) protein (346aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=F7KH28_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:EGN33197.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
putative replication initiation factorTn916-like, CTn6-Orf21
NECEvent2014_2_3_scaffold_179_8
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8438..8659
DNA (222bp) protein (74aa)
Uncharacterized protein n=7 Tax=Clostridiales RepID=F7KH29_9FIRM
putative conjugative transposon proteinTn916-like, CTn6-Orf20
Conjugative transposon protein {ECO:0000313|EMBL:ENZ19554.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
NECEvent2014_2_3_scaffold_179_9
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8845..9351
DNA (507bp) protein (169aa)
Superinfection exclusion B family protein n=4 Tax=Clostridiales RepID=T4F8L0_CLODI rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL40207.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
NECEvent2014_2_3_scaffold_179_10
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9646..9918
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. D7 RepID=C3RNY7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENZ19556.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Antirestriction protein (ArdA).
NECEvent2014_2_3_scaffold_179_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9935..10432
DNA (498bp) protein (166aa)
Antirestriction family protein n=3 Tax=Clostridium difficile RepID=T4FA62_CLODI rbh
putative antirestriction proteinTn916-like,CTn6-Orf17
Conjugative transposon protein {ECO:0000313|EMBL:CKG76542.1}; Putative antirestriction proteinTn916-like,CTn6-Orf17 {ECO:0000313|EMBL:CEJ99995.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia;
NECEvent2014_2_3_scaffold_179_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10522..10914
DNA (393bp) protein (131aa)
Uncharacterized protein n=7 Tax=Firmicutes RepID=T5LTV1_9FIRM
conjugative transposon protein
Putative conjugative transposon proteinTn916-like, CTn6-Orf16 {ECO:0000313|EMBL:CEJ99994.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridiu
NECEvent2014_2_3_scaffold_179_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10898..13351
DNA (2454bp) protein (818aa)
AAA-like domain protein n=2 Tax=Clostridium difficile RepID=T4F8K5_CLODI rbh
Conjugative transposon protein {ECO:0000313|EMBL:CKG76570.1}; Putative ATPase Tn916-like, CTn6-Orf15 {ECO:0000313|EMBL:CEJ99993.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales;
putative ATPase Tn916-like, CTn6-Orf15
NECEvent2014_2_3_scaffold_179_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13348..15729
DNA (2382bp) protein (794aa)
Putative membrane protein Tn916-like,CTn6-Orf14 n=3 Tax=Clostridium difficile RepID=Q180I2_CLOD6 rbh
Putative membrane protein Tn916-like,CTn6-Orf14 {ECO:0000313|EMBL:CAJ70235.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source=
putative membrane protein Tn916-like,CTn6-Orf14
NECEvent2014_2_3_scaffold_179_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15726..16730
DNA (1005bp) protein (335aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=A8RV73_9CLOT rbh
cell wall hydrolase
Putative cell wall hydrolase Tn916-like,CTn6-Orf13 {ECO:0000313|EMBL:CAJ70234.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sour
NECEvent2014_2_3_scaffold_179_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16747..17655
DNA (909bp) protein (303aa)
Conjugative transposon TcpC family protein n=2 Tax=Clostridium difficile RepID=T4F2Z0_CLODI rbh
putative conjugative transposon proteinTn916-like, CTn6-Orf12
Conjugative transposon protein {ECO:0000313|EMBL:CKG76644.1}; Putative conjugative transposon proteinTn916-like, CTn6-Orf12 {ECO:0000313|EMBL:CEJ99990.1}; TaxID=1496 species="Bacteria; Firmicutes; Clo
NECEvent2014_2_3_scaffold_179_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17957..18427)
DNA (471bp) protein (157aa)
GyrI-like small molecule binding domain protein n=3 Tax=Clostridium difficile RepID=T4F782_CLODI rbh
putative transcriptional regulatorTn916-like,CTn6-Orf11
DNA gyrase inhibitor {ECO:0000313|EMBL:CKG76665.1}; Putative transcriptional regulatorTn916-like,CTn6-Orf11 {ECO:0000313|EMBL:CEJ99989.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostri
NECEvent2014_2_3_scaffold_179_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18424..18666)
DNA (243bp) protein (81aa)
Putative conjugative transposon protein Tn916-like, CTn6-Orf10 n=2 Tax=Clostridium difficile RepID=Q180H6_CLOD6
conjugative transposon protein
Putative conjugative transposon proteinTn916-like, CTn6-Orf10 {ECO:0000313|EMBL:CEJ99988.1}; Uncharacterized protein {ECO:0000313|EMBL:CKG76696.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia
NECEvent2014_2_3_scaffold_179_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18897..19142)
DNA (246bp) protein (82aa)
TfoX N-terminal domain n=5 Tax=Clostridiales RepID=D4LWR4_9FIRM
putative conjugative transposon proteinTn916-like, CTn6-Orf9
Putative conjugative transposon proteinTn916-like, CTn6-Orf9 {ECO:0000313|EMBL:CEJ99987.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium
NECEvent2014_2_3_scaffold_179_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19154..19723)
DNA (570bp) protein (190aa)
Transcriptional regulator, TetR family Tn916-like, CTn6-Orf8 n=5 Tax=Firmicutes RepID=Q180H8_CLOD6 rbh
Transcriptional regulator, TetR family;Tn916-like, CTn6-Orf8
Transcriptional regulator, TetR family Tn916-like, CTn6-Orf8 {ECO:0000313|EMBL:CAJ70229.2}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridi
NECEvent2014_2_3_scaffold_179_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19904..20599
DNA (696bp) protein (232aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=T4FA56_CLODI rbh
conjugative transposon protein
Putative conjugative transposon protein Tn916-like, CTn6-Orf7 {ECO:0000313|EMBL:CAJ70228.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostrid
NECEvent2014_2_3_scaffold_179_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20632..20988)
DNA (357bp) protein (119aa)
Helix-turn-helix n=4 Tax=Firmicutes RepID=D7GQX4_9FIRM
HTH-type transcriptional regulator
Helix-turn-helix {ECO:0000313|EMBL:CKG76818.1}; Transcriptional regulator, HTH-typeTn916-like,CTn6-Orf6 {ECO:0000313|EMBL:CEJ99984.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridial
NECEvent2014_2_3_scaffold_179_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21589..22008
DNA (420bp) protein (140aa)
Sigma-70 family RNA polymerase sigma factor n=3 Tax=Firmicutes RepID=C3RNX7_9FIRM
putative RNA polymerase sigma factorTn916-like,CTn6-Orf5
Putative RNA polymerase sigma factor Tn916-like,CTn6-Orf5 {ECO:0000313|EMBL:CAJ70226.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.
NECEvent2014_2_3_scaffold_179_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22005..22244
DNA (240bp) protein (80aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=C3RNX6_9FIRM
conjugative transposon protein
Helix-turn-helix domain {ECO:0000313|EMBL:CKG76866.1}; Putative conjugative transposon proteinTn916-like, CTn6-Orf4 {ECO:0000313|EMBL:CEJ99982.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia;
NECEvent2014_2_3_scaffold_179_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22818..23012
DNA (195bp) protein (65aa)
Uncharacterized protein n=6 Tax=Clostridiales RepID=T4F778_CLODI
Protein of unknown function (DUF3173).
Putative conjugative transposon protein Tn916-like, CTn6-Orf2 {ECO:0000313|EMBL:CAJ70224.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostrid
NECEvent2014_2_3_scaffold_179_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23049..24233
DNA (1185bp) protein (395aa)
Integrase, lambdoid phage family Tn916-like,CTn6-Orf1 n=3 Tax=Clostridium difficile RepID=Q180G9_CLOD6 rbh
integrase
Integrase, lambdoid phage family Tn916-like,CTn6-Orf1 {ECO:0000313|EMBL:CAJ70223.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" s
NECEvent2014_2_3_scaffold_179_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24314..26239)
DNA (1926bp) protein (642aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=D5Q0R9_CLODI rbh
putative nucleotide phosphodiesterase
Uncharacterized protein {ECO:0000313|EMBL:EHJ26653.1}; Flags: Fragment;; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pepto
NECEvent2014_2_3_scaffold_179_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26715..27260)
DNA (546bp) protein (182aa)
Winged helix-turn-helix DNA-binding family protein n=34 Tax=Clostridium difficile RepID=T3I735_CLODC rbh
Winged helix-turn-helix DNA-binding family protein {ECO:0000313|EMBL:EQG77497.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sou
hypothetical protein
NECEvent2014_2_3_scaffold_179_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(27569..27925)
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=115 Tax=Clostridium difficile RepID=RL20_CLOD6
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostrid
NECEvent2014_2_3_scaffold_179_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(27981..28175)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=209 Tax=Clostridium difficile RepID=RL35_CLOD6
rpmI; 50S ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostrid
Displaying items 1-30 of 31 in total

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