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NECEvent2014_2_3_scaffold_218

Alias: 172_003_scaffold_218

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_218_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

99..398
DNA (300bp) protein (100aa)
Uncharacterized protein n=165 Tax=Clostridium difficile RepID=F3Y642_CLOD6
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKH19179.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ98603.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae
NECEvent2014_2_3_scaffold_218_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

722..2377
DNA (1656bp) protein (552aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS
ilvD; dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=43 Tax=Clostridium difficile RepID=T2TLX4_CLODI rbh
NECEvent2014_2_3_scaffold_218_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2721..3350
DNA (630bp) protein (210aa)
Transcriptional regulator, TetR family n=49 Tax=Clostridium difficile RepID=Q187X9_CLOD6 rbh
hydR; Transcriptional regulator, TetR family
HydR {ECO:0000313|EMBL:AAK77645.1}; TetR family transcriptional regulator {ECO:0000313|EMBL:CKH19124.1}; Transcriptional regulator, TetR family {ECO:0000313|EMBL:CEJ98600.1}; TaxID=1496 species="Bacte
NECEvent2014_2_3_scaffold_218_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3376..4188
DNA (813bp) protein (271aa)
HydD n=124 Tax=Clostridium difficile RepID=Q93QZ6_CLODI rbh
hydD; putative hydrolase
Dienelactone hydrolase family protein {ECO:0000313|EMBL:EQH99647.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclo
NECEvent2014_2_3_scaffold_218_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4736..5404
DNA (669bp) protein (223aa)
Uncharacterized protein n=29 Tax=Clostridium difficile RepID=T2TYV1_CLODI rbh
Uncharacterized protein {ECO:0000313|EMBL:EQH99646.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
cell surface protein
NECEvent2014_2_3_scaffold_218_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5576..5860
DNA (285bp) protein (95aa)
Uncharacterized protein n=12 Tax=Clostridium difficile RepID=T2TS33_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQI83499.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
Cna protein B-type domain.
NECEvent2014_2_3_scaffold_218_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5842..6237
DNA (396bp) protein (132aa)
Putative uncharacterized protein n=1 Tax=Clostridium difficile RepID=Q93QZ5_CLODI
Putative uncharacterized protein {ECO:0000313|EMBL:AAK77647.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
hypothetical protein
NECEvent2014_2_3_scaffold_218_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6374..7027
DNA (654bp) protein (218aa)
Iron dependent repressor, N-terminal DNA binding domain protein n=38 Tax=Clostridium difficile RepID=T2TSR1_CLODI rbh
Iron dependent repressor, N-terminal DNA binding domain protein {ECO:0000313|EMBL:EQI83498.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclost
effR; Transcriptional regulator, MarR family
NECEvent2014_2_3_scaffold_218_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7116..8438
DNA (1323bp) protein (441aa)
MATE efflux family protein n=34 Tax=Clostridium difficile RepID=T2TUG9_CLODI rbh
MATE efflux family protein {ECO:0000313|EMBL:EQI83497.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium di
effD; putative drug/sodium antiporter, MATE family
NECEvent2014_2_3_scaffold_218_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8583..8912
DNA (330bp) protein (110aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=T4NM17_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL22266.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
hypothetical protein
NECEvent2014_2_3_scaffold_218_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8860..9219)
DNA (360bp) protein (120aa)
Helix-turn-helix family protein n=13 Tax=Clostridium difficile RepID=T3DIZ1_CLODI
Transcriptional regulator, HTH-type {ECO:0000313|EMBL:CCL22265.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclost
Transcriptional regulator, HTH-type
NECEvent2014_2_3_scaffold_218_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9235..9651
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Clostridium difficile Y384 RepID=T4HNA2_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQI83494.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
hypothetical protein
NECEvent2014_2_3_scaffold_218_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10102..11043
DNA (942bp) protein (314aa)
Major intracellular serine protease {ECO:0000313|EMBL:EQI83521.1}; EC=3.4.21.- {ECO:0000313|EMBL:EQI83521.1};; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococca
Major intracellular serine protease n=126 Tax=Clostridium difficile RepID=C9XJN4_CLODC rbh
ispD; major intracellular serine protease
NECEvent2014_2_3_scaffold_218_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11519..11947
DNA (429bp) protein (143aa)
Flavodoxin n=33 Tax=Clostridium difficile RepID=Q187W1_CLOD6
fldX; Flavodoxin
Flavodoxin {ECO:0000313|EMBL:CAJ68878.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 6
NECEvent2014_2_3_scaffold_218_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12100..12306)
DNA (207bp) protein (69aa)
4-hydroxy-2-oxovalerate aldolase domain protein {ECO:0000313|EMBL:EQI83519.1}; EC=4.1.2.- {ECO:0000313|EMBL:EQI83519.1};; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptos
Uncharacterized protein n=72 Tax=Clostridium difficile RepID=G6BRR2_CLODI
hypothetical protein
NECEvent2014_2_3_scaffold_218_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12628..13284
DNA (657bp) protein (219aa)
Transcriptional regulator, TetR family n=3 Tax=Clostridium difficile RepID=Q187W0_CLOD6 rbh
TetR family transcriptional regulator
TetR family transcriptional regulator {ECO:0000313|EMBL:CKH18669.1}; Transcriptional regulator, TetR family {ECO:0000313|EMBL:CEJ98581.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostri
NECEvent2014_2_3_scaffold_218_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13368..14447
DNA (1080bp) protein (360aa)
Putative alpha/beta hydrolase {ECO:0000313|EMBL:CKH18628.1}; EC=3.4.11.5 {ECO:0000313|EMBL:CKH18628.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pep
putative proline iminopeptidase (PIP), S33family (EC:3.4.11.5)
Prolyl oligopeptidase family protein n=41 Tax=Clostridium difficile RepID=T2TYK8_CLODI rbh
NECEvent2014_2_3_scaffold_218_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15449..15574
DNA (126bp) protein (42aa)
Uncharacterized protein n=8 Tax=Clostridium difficile RepID=G6BRR5_CLODI
Uncharacterized protein; TaxID=1151349 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00216.;"
NECEvent2014_2_3_scaffold_218_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15720..17375
DNA (1656bp) protein (552aa)
Transcriptional regulator, AraC family n=53 Tax=Clostridium difficile RepID=Q187V9_CLOD6 rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CAJ68875.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclo
Transcriptional regulator, AraC family
NECEvent2014_2_3_scaffold_218_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17434..18186
DNA (753bp) protein (251aa)
Sulfite exporter TauE/SafE family protein n=82 Tax=Clostridium difficile RepID=T3GJT8_CLODC rbh
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CCL22236.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium dif
NECEvent2014_2_3_scaffold_218_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18397..18531
DNA (135bp) protein (45aa)
Uncharacterized protein n=220 Tax=Clostridium difficile RepID=T3GMH0_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQH99637.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_218_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19148..19447
DNA (300bp) protein (100aa)
ArsR-family transcriptional regulator n=14 Tax=Clostridium difficile RepID=C9XJM8_CLODC
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:EHJ29715.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclo
NECEvent2014_2_3_scaffold_218_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19428..20069
DNA (642bp) protein (214aa)
Uncharacterized protein n=128 Tax=Clostridium difficile RepID=G6BRS0_CLODI rbh
putative membrane protein, DUF1648 family
Putative membrane protein, DUF1648 family {ECO:0000313|EMBL:CCL22233.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pept
NECEvent2014_2_3_scaffold_218_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20313..20645
DNA (333bp) protein (111aa)
Uncharacterized protein n=96 Tax=Clostridium difficile RepID=T3GP85_CLODC
decarboxylase
Decarboxylase {ECO:0000313|EMBL:CKH18493.1}; Putative decarboxylase {ECO:0000313|EMBL:CEJ98574.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclos
NECEvent2014_2_3_scaffold_218_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21186..21350
DNA (165bp) protein (55aa)
Uncharacterized protein n=217 Tax=Clostridium difficile RepID=C9XJM5_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK98334.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_218_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21574..22419)
DNA (846bp) protein (282aa)
NTF2-like N-terminal transpeptidase domain protein n=132 Tax=Clostridium difficile RepID=T2TLW0_CLODI rbh
putative lipoprotein
Lipoprotein {ECO:0000313|EMBL:CKH18453.1}; Putative lipoprotein {ECO:0000313|EMBL:CEJ98572.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostrid
NECEvent2014_2_3_scaffold_218_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22490..22672)
DNA (183bp) protein (61aa)
Integrase n=73 Tax=Clostridium difficile RepID=U3ZG33_CLODI
Phage integrase family protein {ECO:0000313|EMBL:EQE63851.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridiu
integrase
NECEvent2014_2_3_scaffold_218_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22915..23259
DNA (345bp) protein (115aa)
Uncharacterized protein n=5 Tax=Clostridium difficile RepID=U3YQR9_CLODI
Predicted ATP-binding protein involved in virulence {ECO:0000313|EMBL:CKH18435.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sourc
hypothetical protein
NECEvent2014_2_3_scaffold_218_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23423..23623)
DNA (201bp) protein (67aa)
Cold shock protein n=176 Tax=Clostridium difficile RepID=C9XJM3_CLODC
cspC; cold shock protein
Major cold shock protein CspA {ECO:0000313|EMBL:EHJ24714.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_3_scaffold_218_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23849..24025)
DNA (177bp) protein (59aa)
Uncharacterized protein n=107 Tax=Clostridium difficile RepID=T3IS53_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA62840.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffic
Displaying items 1-30 of 31 in total

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