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NECEvent2014_2_3_scaffold_238

Alias: 172_003_scaffold_238

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_3_scaffold_238_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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140..598
DNA (459bp) protein (153aa)
PTS system, fructose/mannitol family IIAcomponent (EC:2.7.1.69)
PTS system, fructose/mannitol family IIA component {ECO:0000313|EMBL:CAJ69214.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CAJ69214.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pep
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 family protein n=28 Tax=Clostridium difficile RepID=T3GFD0_CLODC rbh
NECEvent2014_2_3_scaffold_238_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

659..934
DNA (276bp) protein (92aa)
gatB; PTS system galactitol-specific transporter subunit IIB (EC:2.7.1.69)
PTS system, Lactose/Cellobiose specific IIB subunit n=204 Tax=Clostridium difficile RepID=C9XLA8_CLODC
PTS system, Lactose/Cellobiose specific IIB subunit {ECO:0000313|EMBL:EQE61941.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" so
NECEvent2014_2_3_scaffold_238_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

993..2267
DNA (1275bp) protein (425aa)
PTS system, galactitol-specific IIC component family protein n=63 Tax=Clostridium difficile RepID=T3GI33_CLODC rbh
PTS system, fructose/mannitol family IICcomponent
PTS system, fructose/mannitol family IIC component {ECO:0000313|EMBL:CAJ69212.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" sour
NECEvent2014_2_3_scaffold_238_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2397..3449
DNA (1053bp) protein (351aa)
putative sugar-phosphate dehydrogenase (EC:1.1.1.-)
Zinc-binding dehydrogenase family protein n=56 Tax=Clostridium difficile RepID=T3GKB8_CLODC rbh
Zinc-binding dehydrogenase family protein {ECO:0000313|EMBL:EQE61955.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pept
NECEvent2014_2_3_scaffold_238_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3449..4480
DNA (1032bp) protein (344aa)
putative sugar-phosphate dehydrogenase (EC:1.1.1.-)
Putative sugar-phosphate dehydrogenase {ECO:0000313|EMBL:CAJ69210.1}; EC=1.1.1.- {ECO:0000313|EMBL:CAJ69210.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococc
Zinc-binding dehydrogenase family protein n=28 Tax=Clostridium difficile RepID=T3GJS1_CLODC rbh
NECEvent2014_2_3_scaffold_238_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4572..5384
DNA (813bp) protein (271aa)
Transketolase, N-terminal (Sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glycolaldehydetransferase) {ECO:0000313|EMBL:CAJ69209.1}; EC=2.2.1.1 {ECO:0000313|EMBL:CAJ69209.1};; TaxID=272563 spec
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein n=135 Tax=Clostridium difficile RepID=C9XLA4_CLODC rbh
tkt; transketolase
NECEvent2014_2_3_scaffold_238_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5387..6307
DNA (921bp) protein (307aa)
Transketolase n=129 Tax=Clostridium difficile RepID=C9XLA3_CLODC rbh
tkt'; transketolase
Transketolase, pyridine binding domain protein {ECO:0000313|EMBL:EHJ25136.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="
NECEvent2014_2_3_scaffold_238_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6482..6928
DNA (447bp) protein (149aa)
rpiB1; ribose-5-phosphate isomerase B (EC:5.3.1.6)
Ribose-5-phosphate isomerase B1 (Phosphoriboisomerase B) {ECO:0000313|EMBL:CAJ69207.1}; EC=5.3.1.6 {ECO:0000313|EMBL:CAJ69207.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales
Ribose 5-phosphate isomerase B n=214 Tax=Clostridium difficile RepID=C9XLA2_CLODC
NECEvent2014_2_3_scaffold_238_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6958..7623
DNA (666bp) protein (222aa)
Ribulose-phosphate 3 epimerase family protein n=170 Tax=Clostridium difficile RepID=T2TCZ2_CLODI rbh
rpe; ribulose-phosphate 3-epimerase
Ribulose-phosphate 3 epimerase family protein {ECO:0000313|EMBL:EQG75490.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="
NECEvent2014_2_3_scaffold_238_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7733..9235
DNA (1503bp) protein (501aa)
phosphohexomutase (EC:5.4.2.-)
Putative phosphohexomutase {ECO:0000313|EMBL:CCL22644.1}; EC=5.4.2.- {ECO:0000313|EMBL:CCL22644.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pept
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein n=101 Tax=Clostridium difficile RepID=T3GJR6_CLODC rbh
NECEvent2014_2_3_scaffold_238_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9547..11136)
DNA (1590bp) protein (530aa)
Two-component sensor histidine kinase {ECO:0000313|EMBL:CKH28254.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CKH28254.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcac
Two-component sensor histidine kinase n=1 Tax=Clostridium difficile T22 RepID=U3WNN0_CLODI rbh
Two-component sensor histidine kinase
NECEvent2014_2_3_scaffold_238_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11105..11821)
DNA (717bp) protein (239aa)
Response regulator n=175 Tax=Clostridium difficile RepID=T3GKD8_CLODC rbh
Two-component response regulator
Response regulator {ECO:0000313|EMBL:EQI81397.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile
NECEvent2014_2_3_scaffold_238_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12361..13161)
DNA (801bp) protein (267aa)
Uncharacterized protein n=136 Tax=Clostridium difficile RepID=Q185I9_CLOD6 rbh
putative exported protein
Putative exported protein {ECO:0000313|EMBL:CAJ69202.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_238_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13475..14206)
DNA (732bp) protein (244aa)
Uncharacterized protein n=69 Tax=Clostridium difficile RepID=C9XL96_CLODC rbh
hypothetical protein
Domain of uncharacterised function (DUF364) {ECO:0000313|EMBL:CKH28164.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS85650.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; P
NECEvent2014_2_3_scaffold_238_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14193..14888)
DNA (696bp) protein (232aa)
molybdenum-like ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CKH28136.1}; EC=3.6.3.31 {ECO:0000313|EMBL:CKH28136.1};; ABC-type transport system, molybdenum-likeATP-binding protein {ECO:0000313|EMBL:CEJ98931.
ABC transporter family protein n=12 Tax=Clostridium difficile RepID=T3GGI2_CLODC rbh
NECEvent2014_2_3_scaffold_238_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14890..15681)
DNA (792bp) protein (264aa)
ABC-type transport system, molybdenum-like permease n=43 Tax=Clostridium difficile RepID=Q185I6_CLOD6 rbh
molybdenum-like ABC transporter permease
ABC-type transport system, molybdenum-like permease {ECO:0000313|EMBL:CCL22638.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" so
NECEvent2014_2_3_scaffold_238_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15691..16503)
DNA (813bp) protein (271aa)
ABC transporter, substrate-binding protein0 n=204 Tax=Clostridium difficile RepID=C9XL93_CLODC rbh
ABC transporter substrate-binding protein
Molybdate ABC transporter, periplasmic molybdate-binding protein {ECO:0000313|EMBL:EQE61950.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclos
NECEvent2014_2_3_scaffold_238_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17138..17338)
DNA (201bp) protein (67aa)
Cold shock protein n=177 Tax=Clostridium difficile RepID=C9XL92_CLODC
cspD; cold shock protein
Cold shock protein {ECO:0000313|EMBL:CBE05331.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (
NECEvent2014_2_3_scaffold_238_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17563..17739)
DNA (177bp) protein (59aa)
Uncharacterized protein n=157 Tax=Clostridium difficile RepID=T3GGK1_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG76855.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
NECEvent2014_2_3_scaffold_238_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18062..18262)
DNA (201bp) protein (67aa)
Helix-turn-helix family protein n=89 Tax=Clostridium difficile RepID=C9XL88_CLODC
transcriptional regulator
Transcriptional regulator, HTH-type {ECO:0000313|EMBL:CCK91071.1}; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclost
NECEvent2014_2_3_scaffold_238_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18264..18614)
DNA (351bp) protein (117aa)
Uncharacterized protein n=37 Tax=Clostridium difficile RepID=T3GKH9_CLODC
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:CAJ69194.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diff
NECEvent2014_2_3_scaffold_238_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18776..19009
DNA (234bp) protein (78aa)
Uncharacterized protein n=137 Tax=Clostridium difficile RepID=T3GJW9_CLODC
Uncharacterized protein {ECO:0000313|EMBL:CCL22634.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium diffi
hypothetical protein
NECEvent2014_2_3_scaffold_238_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20001..20495)
DNA (495bp) protein (165aa)
Prepilin-type N-terminal cleavage/methylation domain protein n=44 Tax=Clostridium difficile RepID=T3GFH0_CLODC rbh
putative pilin protein
Pilin protein {ECO:0000313|EMBL:CKH27937.1}; Putative pilin protein {ECO:0000313|EMBL:CEJ98921.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclos
NECEvent2014_2_3_scaffold_238_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20818..20928)
DNA (111bp) protein (37aa)
Uncharacterized protein n=4 Tax=Clostridium difficile RepID=T2USD2_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS87717.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficil
hypothetical protein
NECEvent2014_2_3_scaffold_238_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21299..21676
DNA (378bp) protein (126aa)
Transcriptional regulator, beta-lactams repressor Phage-type n=41 Tax=Clostridium difficile RepID=Q185H5_CLOD6
Transcriptional regulator, beta-lactamsrepressor Phage-type
Transcriptional regulator, beta-lactams repressor Phage-type {ECO:0000313|EMBL:CAJ69190.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridi
NECEvent2014_2_3_scaffold_238_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21781..21972
DNA (192bp) protein (64aa)
Penicillinase repressor family protein n=71 Tax=Clostridium difficile RepID=T3GGN4_CLODC
repressor
Repressor (Partial) {ECO:0000313|EMBL:CKH27882.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (C
Displaying 26 items

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