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NECEvent2014_2_8_scaffold_417

Alias: 172_008_scaffold_417

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_2_8_scaffold_417_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..984
DNA (984bp) protein (328aa)
cysS; Cysteinyl-tRNA synthetase (Cysteine--tRNAligase) (CysRS) (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:00
Cysteine--tRNA ligase n=1 Tax=Clostridium difficile DA00129 RepID=T3MM78_CLODI rbh
NECEvent2014_2_8_scaffold_417_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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987..1382
DNA (396bp) protein (132aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01
Mini-ribonuclease 3 n=146 Tax=Clostridium difficile RepID=T3IJ58_CLODC
hypothetical protein
NECEvent2014_2_8_scaffold_417_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1488..2246
DNA (759bp) protein (253aa)
thyX; FAD-dependent thymidylate synthase (EC:2.1.1.148)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408}
Thymidylate synthase ThyX n=163 Tax=Clostridium difficile RepID=T3IP75_CLODC rbh
NECEvent2014_2_8_scaffold_417_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2259..2996
DNA (738bp) protein (246aa)
23S rRNA methyltransferase {ECO:0000313|EMBL:CDS88971.1}; EC=2.1.1.- {ECO:0000313|EMBL:CDS88971.1};; Putative tRNA/rRNA methyltransferase, TrmH family, group3 {ECO:0000313|EMBL:CDS90335.1}; EC=2.1.1.-
RNA 2'-O ribose methyltransferase substrate binding family protein n=175 Tax=Clostridium difficile RepID=T3IQG8_CLODC rbh
tRNA/rRNA methyltransferase
NECEvent2014_2_8_scaffold_417_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2999..3526
DNA (528bp) protein (176aa)
Uncharacterized protein n=157 Tax=Clostridium difficile RepID=C9XIH2_CLODC rbh
hypothetical protein
YacP-like NYN domain protein {ECO:0000313|EMBL:EQG78957.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium
NECEvent2014_2_8_scaffold_417_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3591..4238
DNA (648bp) protein (216aa)
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:CCK89609.1}; EC=2.7.7.6 {ECO:0000313|EMBL:CCK89609.1};; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae;
RNA polymerase sigma-H factor n=219 Tax=Clostridium difficile RepID=C9XIH3_CLODC rbh
sigH; RNA polymerase factor sigma-70
NECEvent2014_2_8_scaffold_417_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4312..5505
DNA (1194bp) protein (398aa)
Elongation factor Tu n=329 Tax=Clostridium difficile RepID=EFTU_CLOD6 rbh
elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostrid
Displaying 7 items

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