ggKbase home page
Advanced Search
Search Help

NECEvent2014_3_4_Veillonella_parvula-rel_38_333_scaffold_5_6

Organism: NECEvent2014_3_4_Veillonella_parvula-rel_38_333_plum

near complete RP 52 / 55 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(5922..10124)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase similarity UNIPROT
DB: UniProtKB
  • Identity: 99.9
  • Coverage: 999.99
  • Bit_score: 2744
  • Evalue 0.0
  • rbh
DNA-directed RNA polymerase subunit beta' n=4 Tax=Veillonella RepID=T0SUW0_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 99.9
  • Coverage: 999.99
  • Bit_score: 2745
  • Evalue 0.0
  • rbh
DNA-directed RNA polymerase subunit beta' similarity KEGG
DB: KEGG
  • Identity: 99.7
  • Coverage: 999.99
  • Bit_score: 2740
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Veillonella dispar → Veillonella → Selenomonadales → Negativicutes → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 4203
GTGCTAGACGTAAATGAATTCGATTCCATGCGAATCGGTTTAGCCTCTCCAGAGCAGATTTTATCCTGGTCTCATGGGGAAGTTAAGAAACCTGAAACAATTAACTACCGTACGTTGAAGCCAGAACGTGATGGTCTATTCTGTGAACGCATTTTTGGACCAACAAAGGACTGGGAATGTCACTGCGGCAAATATAAACGCATCCGCCATAAGGGCGTAGTCTGCGACAAATGTGGTGTAGAGGTTACCCGTGCGAAAGTACGTCGTGAACGTATGGGCCATATTCAATTGGCTACTCCTGTATCTCACATTTGGTACTTCAAAGGAATCCCATCCCGTATGGGTCTTATCCTTGACATATCACCACGTTCTTTGGAACGCGTATTATACTTTGCTTCCTACATCGTAGTAGATCCAGCTGGTACACCATTGACAAAACGTCAATTGTTGTCCGAGCAAGAATACCGCGAATACGAAGCTCAATTTAATGAAGACGGTTATACTATCGGTGGTAAATCCGTCGTAATCGAAACAGTGGCTCAACGTAATGAACGTTTAGCTATTGTTCGTGAAGCACAACGCAAAGAGCGCTATAATGCGGCTCTTCGTGATGATGCAACAATACCAGAAGCTGATAAGGAATACGAAGAATTAACTCGCGAAGAACGCTATGAGTTAGGCGCTGCTGAAGAGGTTCTCTTCGCATGTATCGACATGGGTGCTGAAGCGGTAAAAGCTCTCTTATCAGAACTTGATCTTGAAGCATTGAATGCCGAATTGCGCGAAGAGCTGAACACTGCTAGTGGTCAACGTAAAATCCGTGCAGTTCGTCGTTTGGAAGTAGTAGAAGCATTCCGTCAATCTGGGAACCGTCCAGAATGGATGATTATGGACATCGTTCCTGTAATCCCACCTGAATTGCGTCCTATGGTCCAATTAGATGGTGGCCGTTTTGCTACATCTGACCTCAACGATTTATACCGTCGTGTTATTAACCGTAACAACCGTTTGAAACGTTTACTCGACTTGGGTGCTCCTGATATCATCGTGCGCAACGAAAAACGCATGCTTCAAGAAGCGGTTGATGCATTGATTGATAATGGTCGTCGCGGTCGTCCTGTTACAGGTCCTGGTAACCGCCCATTGAAATCCTTGTCCGACATGCTTAAAGGTAAACAAGGTCGTTTCCGTCAAAACTTGCTCGGTAAACGTGTTGACTACTCCGGTCGTTCCGTAATCGTAGTAGGTCCTGAACTTAAAATGCACCAATGTGGTTTGCCAAAAGAAATGGCATTAGAATTGTTCAAACCATTCGTTATGAAACGTTTGGTAGAACGCGGTCAAGCATCCAACATCAAGGCTGCTAAACGCCAAGTTGAAAGAATTGGCCCTGGCGTGTGGGAATCCTTGGAAGAGGTAATTAAAGAACATCCAGTTCTCTTGAACCGTGCCCCTACATTGCATAGACTTGGTATCCAAGCCTTCGAACCAATCCTTTGGGAAGGTCGTGCTATCAAATTGCATCCATTAGTATGTACAGCCTTCAATGCCGACTTTGACGGTGACCAAATGGCGTGTCACTTACCATTGTCCGTAGAAGCACAAGCGGAAGCTCGTACATTGATGCTTTCTAGCCATAATATTTTGTCTACTAAGGACGGCAAGCCAGTAGCAGTACCTTCTCAAGATATGATCTTAGGTACATACTACCTAACAGTTGTACGCGAAGATACTCGTGATAAAGCAAAAACATTTGCTACCTATGATGAAGTTATGCTTGCCTATGAGTCTCATATCATTGGTTTGCAAGATATTCTTTATATCCGTTTACCTGATCATGGCCGTGTAGAAACAACAGCAGGTCGCTTGATCTTCAATAATGCTTTATTCCCAGAATTGTGGCAATACGAGAAACGTGAAGATGGCACTTACTCTTTAGGTAAGGTTATGGATAAGAAAACAGTTGGTAAATTGGTTGATCAATGTTTCCAATTGTTTGGTAATGAAAAAACAGCAGAATTATTGGACCGCATCAAGTCCTTGGGTTACTCCTTCGCTCGTCGCGCAGGTATGACGGTAGCTATTGCTGATATTAAAGTACCAGAAGTTAAAACTAGTTTGTTAGATACAGCGGAACAAGAGGTAGAAAAAGTATCTCGTATGTATCGTCGTGGTCTTATTACAGAAGAAGAACGTTATCGTAAAACTATCCAATTATGGACAAAGGCAACAGAAGATGTTACCGATGCGATGATGGATAATATGGCGTGCGATAAAGACGGCTTTAACCCTGTTTACATGATGGCTATCTCTGGTGCCCGTGGTAATAAACAACAGATTCGTCAGCTTGCTGGTATGCGTGGTTTGATGGCCGATCCATCTGGTCGAATCATTGACTTGCCAATTAAAGCAAACTTTAAAGAAGGCTTGACTGTATTGGATTACTTTACATCCTCTCATGGTGCTCGTAAAGGTTTGGCCGATACAGCGCTTCGTACAGCTGACTCTGGTTACTTGACACGTCGTCTTGTTGACGTATCTCAAGATGTAATCGTTCGTGAGGACGATTGTGACGTTGTAGGTATCGATCTCGTTCGTGAACGTGCTCGTTTGGCTACATCTCCACGTCAAGCATTAGAATTGCTTAAGGATAAACTCATTGGTCGCGTTTTAGATAAAGATGTTGTGAATGCTGAAACAGGGGAACTTGTTGTACCAGCTGAAACTATCTTGGATGAACAATGTTTGGCAGATATTGCTGAAGCTGGTGTTACATCTATCGCATTGCGCGGTGCACATTTGGGCTCTGATAGCGATATTAATCATACTAACTTGGTTCAAAAAATTATTCTTGGTGAAAGCGACGATAGTATCCGTGCAACATTGAAAGAAACTATGGTTCAAAATATGTTGAACAAGGATACTGTACAAGCAATCGTTGACAGCGAAGGTGTAGAAATCTTCCCAGCTGATACACGTCTTACTGAAGAAGGCATCGAAGCTATCCTTAACTCCGATGTAAAAGAAGTACAAGTACGGAACAATGAAATCCACGGTATTGAAGTGGAAGCTATCGTTGAAGGTACTGGTGTTATCGAGCCATTAAAAGACCGTATCGTAGGTCGTATTGCAGCTGAAGAATTAGTTAACAAGGAAACTGGCGAAGTTATCGTTCCTCTTAATGGTGAAATCACAGAGGCGTTAGCTGATGAAGTTGTAAAACACTATGAAACAGTAAAAATCCGTTCCGTATTGACTTGTCGTAGCCCATATGGCGTATGCCGCAAGTGCTATGGTCGTGATCTAGGAACTGGCAACCAAGTTCAAGTTGGTGAAGCTGTAGGTATCATTGCGGCACAATCCATCGGTGAACCTGGTACTCAGTTGACAATGCGTACATTCCATACTGGTGGTGTCGCAGGTGACGATATTACACAAGGTTTGCCACGTGTCGAAGAATTGTTCGAAGCTCGTAAACCAAAACGTAACGCTATCATTGCCGAAAACGAAGGTACAGTTCGTGTTGTGCCTAATGAAGGTAAGAAAGGTACGAACACTATCTTTATCACTGGTGAAGATGGTATTGAACTTGATTACCTCATTCCTTACGGCTCCCGCATTATCGTTAAAGACGGTGACGTGGTATCCTTGGGCGCTCGTTTGACAGAAGGCTCCATCAATCCTCATGACATTATGCGTGTCATGGGTACTGAAGCAACTCAACGTTATCTCGTATACGAAGTACAAAAAGTATACAAATCCCAAGGTGTAGAAATTAACGATAAACATATCGAAGTTATCGTTCGTCAAATGCTTCATAAAGTTAAAATTGAAACAGCTGGCGATGCGGATATGCTTCCAGGGGATATGGTGGACGTTAATACCTTTGACGAAGAAAACCGTCGTCTTACCCTCAATGGTCGTGAAAATGCTACAAGCAAACGCACACTATTGGGTATTACGAAAGCCGCTTTGGCAACGGACTCCTTCTTGTCCGCTGCGTCCTTCCAAGAAACAACACGTGTTCTTACCGACGCTGCTATCAAGGGTAAAATCGATCCATTATTGGGCTTGAAAGAAAACGTAATTATCGGTAAGTTGATTCCTGCGGGTACAGGCATGAGTCGTTACCGTAAGATTGAAGTTGTAAAAAATACACCTGAAATCATTGATATTACGGAAGAGGTTATGTCTGAAGATTAA
PROTEIN sequence
Length: 1401
VLDVNEFDSMRIGLASPEQILSWSHGEVKKPETINYRTLKPERDGLFCERIFGPTKDWECHCGKYKRIRHKGVVCDKCGVEVTRAKVRRERMGHIQLATPVSHIWYFKGIPSRMGLILDISPRSLERVLYFASYIVVDPAGTPLTKRQLLSEQEYREYEAQFNEDGYTIGGKSVVIETVAQRNERLAIVREAQRKERYNAALRDDATIPEADKEYEELTREERYELGAAEEVLFACIDMGAEAVKALLSELDLEALNAELREELNTASGQRKIRAVRRLEVVEAFRQSGNRPEWMIMDIVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMHQCGLPKEMALELFKPFVMKRLVERGQASNIKAAKRQVERIGPGVWESLEEVIKEHPVLLNRAPTLHRLGIQAFEPILWEGRAIKLHPLVCTAFNADFDGDQMACHLPLSVEAQAEARTLMLSSHNILSTKDGKPVAVPSQDMILGTYYLTVVREDTRDKAKTFATYDEVMLAYESHIIGLQDILYIRLPDHGRVETTAGRLIFNNALFPELWQYEKREDGTYSLGKVMDKKTVGKLVDQCFQLFGNEKTAELLDRIKSLGYSFARRAGMTVAIADIKVPEVKTSLLDTAEQEVEKVSRMYRRGLITEEERYRKTIQLWTKATEDVTDAMMDNMACDKDGFNPVYMMAISGARGNKQQIRQLAGMRGLMADPSGRIIDLPIKANFKEGLTVLDYFTSSHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREDDCDVVGIDLVRERARLATSPRQALELLKDKLIGRVLDKDVVNAETGELVVPAETILDEQCLADIAEAGVTSIALRGAHLGSDSDINHTNLVQKIILGESDDSIRATLKETMVQNMLNKDTVQAIVDSEGVEIFPADTRLTEEGIEAILNSDVKEVQVRNNEIHGIEVEAIVEGTGVIEPLKDRIVGRIAAEELVNKETGEVIVPLNGEITEALADEVVKHYETVKIRSVLTCRSPYGVCRKCYGRDLGTGNQVQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKPKRNAIIAENEGTVRVVPNEGKKGTNTIFITGEDGIELDYLIPYGSRIIVKDGDVVSLGARLTEGSINPHDIMRVMGTEATQRYLVYEVQKVYKSQGVEINDKHIEVIVRQMLHKVKIETAGDADMLPGDMVDVNTFDEENRRLTLNGRENATSKRTLLGITKAALATDSFLSAASFQETTRVLTDAAIKGKIDPLLGLKENVIIGKLIPAGTGMSRYRKIEVVKNTPEIIDITEEVMSED*