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NECEvent2014_3_4_Clostridium_butyricum_28_15

NECEvent2014_3_4_Clostridium_29_16
In projects: NECEvent2014_3_4

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Displaying items 151-200 of 209 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_3_4_scaffold_280 173_002_scaffold_280
Species: Clostridium butyricum (52.17%)
23 32013 bp 27.71 14.34 85.02
NECEvent2014_3_4_scaffold_745 173_002_scaffold_745
Species: Clostridium butyricum (80%)
5 5379 bp 26.19 14.33 88.34
NECEvent2014_3_4_scaffold_1334 173_002_scaffold_1334
Species: Clostridium sp. IBUN13A (100%)
1 2749 bp 29.36 14.30 90.47
NECEvent2014_3_4_scaffold_345 173_002_scaffold_345
Species: Clostridium butyricum (75%)
16 22503 bp 26.88 14.21 87.15
NECEvent2014_3_4_scaffold_371 173_002_scaffold_371
Species: Clostridium butyricum (70%)
20 19779 bp 29.27 14.19 84.30
NECEvent2014_3_4_scaffold_396 173_002_scaffold_396
Genus: Clostridium (70%)
20 16887 bp 26.05 14.19 87.21
NECEvent2014_3_4_scaffold_187 173_002_scaffold_187
Genus: Clostridium (100%)
46 50415 bp 28.17 14.18 87.65
NECEvent2014_3_4_scaffold_813 173_002_scaffold_813
Species: Clostridium sp. IBUN13A (50%)
6 4902 bp 28.80 14.14 84.15
NECEvent2014_3_4_scaffold_386 173_002_scaffold_386
Species: Clostridium butyricum (50%)
14 17793 bp 27.89 14.13 87.81
NECEvent2014_3_4_scaffold_1853 173_002_scaffold_1853
Species: Clostridium butyricum (100%)
1 1883 bp 27.46 14.10 73.61
NECEvent2014_3_4_scaffold_1483 173_002_scaffold_1483
Genus: Clostridium (100%)
3 2460 bp 29.84 14.09 73.29
NECEvent2014_3_4_scaffold_515 173_002_scaffold_515
Species: Clostridium sp. IBUN125C (55.56%)
9 9777 bp 27.47 14.08 86.35
NECEvent2014_3_4_scaffold_889 173_002_scaffold_889
Species: Clostridium butyricum (66.67%)
3 4459 bp 28.30 14.03 73.54
NECEvent2014_3_4_scaffold_276 173_002_scaffold_276
Genus: Clostridium (100%)
35 32574 bp 28.30 13.95 83.43
NECEvent2014_3_4_scaffold_450 173_002_scaffold_450
Genus: Clostridium (92.86%)
14 12459 bp 27.28 13.89 82.35
NECEvent2014_3_4_scaffold_331 173_002_scaffold_331
Species: Clostridium butyricum (64%)
25 24063 bp 27.95 13.86 84.29
NECEvent2014_3_4_scaffold_469 173_002_scaffold_469
Species: Clostridium butyricum (90.91%)
11 11415 bp 26.56 13.82 87.31
NECEvent2014_3_4_scaffold_1743 173_002_scaffold_1743
Species: Clostridium sp. IBUN22A (50%)
2 2020 bp 27.48 13.66 96.39
NECEvent2014_3_4_scaffold_479 173_002_scaffold_479
Species: Clostridium butyricum (50%)
8 10984 bp 28.25 13.60 86.96
NECEvent2014_3_4_scaffold_474 173_002_scaffold_474
Species: Clostridium sp. IBUN125C (50%)
14 11180 bp 27.42 13.59 78.92
NECEvent2014_3_4_scaffold_852 173_002_scaffold_852
Genus: Clostridium (60%)
5 4661 bp 26.75 13.58 62.28
NECEvent2014_3_4_scaffold_708 173_002_scaffold_708
Species: Clostridium butyricum (60%)
5 5804 bp 27.72 13.54 78.93
NECEvent2014_3_4_scaffold_1103 173_002_scaffold_1103
Species: Clostridium butyricum (50%)
4 3485 bp 25.02 13.52 90.82
NECEvent2014_3_4_scaffold_352 173_002_scaffold_352
Genus: Clostridium (100%)
19 21655 bp 26.84 13.44 80.64
NECEvent2014_3_4_scaffold_290 173_002_scaffold_290
Species: Clostridium sp. IBUN125C (75.86%)
29 29806 bp 27.43 13.41 82.50
NECEvent2014_3_4_scaffold_944 173_002_scaffold_944
Species: Clostridium sp. IBUN125C (50%)
4 4165 bp 27.76 13.33 79.16
NECEvent2014_3_4_scaffold_714 173_002_scaffold_714
Genus: Clostridium (100%)
5 5681 bp 26.53 13.25 86.08
NECEvent2014_3_4_scaffold_581 173_002_scaffold_581
Species: Clostridium butyricum (83.33%)
6 7917 bp 27.45 13.24 93.60
NECEvent2014_3_4_scaffold_468 173_002_scaffold_468
Species: Clostridium butyricum (53.33%)
15 11493 bp 26.96 13.08 77.86
NECEvent2014_3_4_scaffold_818 173_002_scaffold_818
Genus: Clostridium (100%)
10 4883 bp 27.38 13.02 84.23
NECEvent2014_3_4_scaffold_616 173_002_scaffold_616
Species: Clostridium butyricum (85.71%)
7 7301 bp 25.60 12.96 77.04
NECEvent2014_3_4_scaffold_848 173_002_scaffold_848
Species: Clostridium sp. IBUN125C (75%)
4 4689 bp 27.17 12.92 87.01
NECEvent2014_3_4_scaffold_415 173_002_scaffold_415
Species: Clostridium sp. IBUN125C (57.14%)
14 14983 bp 27.13 12.81 84.54
NECEvent2014_3_4_scaffold_384 173_002_scaffold_384
Genus: Clostridium (88%)
25 18042 bp 26.39 12.67 75.54
NECEvent2014_3_4_scaffold_1573 173_002_scaffold_1573
Species: Clostridium butyricum (100%)
2 2300 bp 26.09 12.65 73.96
NECEvent2014_3_4_scaffold_810 173_002_scaffold_810
Species: Clostridium sp. IBUN13A (100%)
3 4938 bp 28.09 12.64 95.57
NECEvent2014_3_4_scaffold_527 173_002_scaffold_527
Species: Clostridium butyricum (87.5%)
8 9299 bp 27.54 12.63 87.59
NECEvent2014_3_4_scaffold_577 173_002_scaffold_577
Species: Clostridium sp. IBUN125C (50%)
8 8063 bp 27.19 12.63 83.19
NECEvent2014_3_4_scaffold_1544 173_002_scaffold_1544
Species: Clostridium sp. IBUN125C (100%)
2 2349 bp 28.57 12.52 88.89
NECEvent2014_3_4_scaffold_1050 173_002_scaffold_1050
Genus: Clostridium (66.67%)
3 3680 bp 28.40 12.47 84.13
NECEvent2014_3_4_scaffold_1883 173_002_scaffold_1883
Species: Clostridium sp. IBUN125C (50%)
2 1854 bp 30.15 12.46 78.64
NECEvent2014_3_4_scaffold_1278 173_002_scaffold_1278
Species: Clostridium butyricum (66.67%)
3 2875 bp 24.17 12.31 81.08
NECEvent2014_3_4_scaffold_817 173_002_scaffold_817
Species: Clostridium butyricum (100%)
4 4888 bp 26.19 12.21 88.50
NECEvent2014_3_4_scaffold_2500 173_002_scaffold_2500
Species: Clostridium butyricum (100%)
1 1254 bp 26.24 11.84 81.82
NECEvent2014_3_4_scaffold_1205 173_002_scaffold_1205
Species: Clostridium butyricum (100%)
3 3115 bp 26.90 11.70 74.35
NECEvent2014_3_4_scaffold_681 173_002_scaffold_681
Species: Clostridium butyricum (80%)
5 6203 bp 24.89 11.56 75.06
NECEvent2014_3_4_scaffold_392 173_002_scaffold_392
Species: Clostridium sp. IBUN125C (55.56%)
18 17351 bp 26.03 11.48 70.75
NECEvent2014_3_4_scaffold_964 173_002_scaffold_964
Species: Clostridium sp. IBUN125C (66.67%)
3 4056 bp 23.57 11.46 72.41
NECEvent2014_3_4_scaffold_792 173_002_scaffold_792
Species: Clostridium butyricum (66.67%)
6 5018 bp 25.37 11.42 87.11
NECEvent2014_3_4_scaffold_493 173_002_scaffold_493
Species: Clostridium butyricum (61.54%)
13 10414 bp 25.50 11.35 83.28
Displaying items 151-200 of 209 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.