ggKbase home page

NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_1
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

59..1195
DNA (1137bp) protein (379aa)
Site-specific recombinase XerD n=1 Tax=Clostridium pasteurianum BC1 RepID=R4KBY4_CLOPA rbh
site-specific recombinase XerD rbh
Site-specific recombinase XerD {ECO:0000313|EMBL:AGK97135.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1. rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_2
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1195..3312
DNA (2118bp) protein (706aa)
Site-specific recombinase XerD n=1 Tax=Clostridium pasteurianum BC1 RepID=R4K608_CLOPA rbh
site-specific recombinase XerD
Site-specific recombinase XerD {ECO:0000313|EMBL:AGK97136.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1. rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_3
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3305..3685
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum BC1 RepID=R4K214_CLOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK97137.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_4
Fusobacterium ulcerans, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(3992..4810)
DNA (819bp) protein (273aa)
Uncharacterized protein n=2 Tax=Fusobacterium ulcerans RepID=H1PTM1_9FUSO rbh
Uncharacterized protein {ECO:0000313|EMBL:EHO80897.1}; TaxID=457404 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium ulcerans 12-1B.;" rbh
hypothetical protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_5
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4957..5340)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MJZ7_ALKOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW20129.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain Oh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_6
Natranaerobius thermophilus, Natranaerobius, Natranaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5424..7961)
DNA (2538bp) protein (846aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=457570 species="Bacteria; Firmicutes; Clostridia; Natranaerobiales; Natranaerobiaceae; Natranaerobius.
hypothetical protein n=2 Tax=Atribacteria bacterium JGI 0000059-I14 RepID=UPI00036BA4F5
UvrD/REP helicase
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_7
Bacillus coagulans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7992..9845)
DNA (1854bp) protein (618aa)
ltrA; group II intron reverse transcriptase/maturase (EC:2.7.7.49)
Group II intron reverse transcriptase/maturase {ECO:0000313|EMBL:AJH77570.1}; EC=2.7.7.49 {ECO:0000313|EMBL:AJH77570.1};; TaxID=1121088 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; rbh
hypothetical protein n=1 Tax=Bacillus coagulans RepID=UPI00034B3B83 rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_8
Flexistipes sinusarabici, Flexistipes, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

comp(10556..11629)
DNA (1074bp) protein (358aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=717231 species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Flexistipes.;" sourc
UvrD/REP helicase n=1 Tax=Flexistipes sinusarabici (strain DSM 4947 / MAS 10) RepID=F8E937_FLESM
UvrD/REP helicase
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_9
Desulfosporosinus meridiei, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11619..14321)
DNA (2703bp) protein (901aa)
hypothetical protein n=1 Tax=Bacillus massiliosenegalensis RepID=UPI000311E587
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFQ42446.1}; TaxID=768704 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus meridiei (s
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_10
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14559..15272
DNA (714bp) protein (238aa)
phosphonate-transporting ATPase (EC:3.6.3.28) rbh
Uncharacterized protein n=1 Tax=Clostridium ultunense Esp RepID=M1ZBZ2_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCQ95308.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;" rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_11
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15273..17366
DNA (2094bp) protein (698aa)
Uncharacterized protein n=1 Tax=Clostridium ultunense Esp RepID=M1ZBE7_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCQ95309.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;" rbh
S-layer family domain protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_12
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17359..18657
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Clostridium ultunense Esp RepID=M1ZAZ9_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCQ94908.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;" rbh
ABC transporter permease subunit
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_13
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18736..19080)
DNA (345bp) protein (115aa)
FMN-binding domain protein n=1 Tax=Solobacterium moorei F0204 RepID=E7MQI7_9FIRM
FMN-binding domain protein {ECO:0000313|EMBL:KIE46065.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 27
FMN-binding domain-containing protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_14
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19347..21275)
DNA (1929bp) protein (643aa)
S-layer domain-containing protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AWY4_CLOA9 rbh
Uncharacterized protein {ECO:0000313|EMBL:KGG80985.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis rbh
S-layer protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_15
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21384..22982)
DNA (1599bp) protein (533aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_0 rbh
pyrG; CTP synthase (EC:6.3.4.2)
CTP synthase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AX44_9CLOT rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_16
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23165..23746)
DNA (582bp) protein (194aa)
Peptidoglycan-binding domain 1 protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MJU6_ALKOO
Uncharacterized protein {ECO:0000313|EMBL:KJF25739.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
peptidoglycan binding domain-containing protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_17
Fusobacterium mortiferum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(23866..25206)
DNA (1341bp) protein (447aa)
Amidohydrolase n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3W9N6_FUSMR rbh
Amidohydrolase {ECO:0000313|EMBL:EEO34573.1}; TaxID=469616 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium mortiferum ATCC 9817.;" rbh
amidohydrolase
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_18
Fusobacterium mortiferum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(25208..26335)
DNA (1128bp) protein (376aa)
putative YqjE (EC:3.4.11.4)
Peptidase T-like protein n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3W9N5_FUSMR rbh
Peptidase T-like protein {ECO:0000313|EMBL:EEO34572.1}; TaxID=469616 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium mortiferum ATCC 9817.;" rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_19
Fusobacterium mortiferum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(26380..27048)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3W9N4_FUSMR rbh
Uncharacterized protein {ECO:0000313|EMBL:EEO34571.1}; TaxID=469616 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium mortiferum ATCC 9817.;" rbh
hypothetical protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_20
Fusobacterium mortiferum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(27069..27779)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3W9N3_FUSMR rbh
Uncharacterized protein {ECO:0000313|EMBL:EEO34570.1}; TaxID=469616 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium mortiferum ATCC 9817.;" rbh
hypothetical protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_21
Fusobacterium ulcerans, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(28220..29503)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Fusobacterium ulcerans 12-1B RepID=H1PPN3_9FUSO rbh
Uncharacterized protein {ECO:0000313|EMBL:EHO84080.1}; TaxID=457404 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium ulcerans 12-1B.;" rbh
hypothetical protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_22
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29647..31164)
DNA (1518bp) protein (506aa)
Integral membrane protein MviN n=1 Tax=Clostridium ultunense Esp RepID=M1Z4F5_9CLOT rbh
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Es rbh
integral membrane protein MviN
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_23
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31287..32777
DNA (1491bp) protein (497aa)
GerA spore germination protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MKB7_ALKOO rbh
GerA spore germination protein
GerA spore germination protein {ECO:0000313|EMBL:ABW20249.1}; Flags: Precursor;; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliph rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_24
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32770..33921
DNA (1152bp) protein (384aa)
Germination protein, Ger(X)C family n=1 Tax=Clostridium termitidis CT1112 RepID=S0FFC6_9CLOT rbh
Germination protein, Ger(X)C family {ECO:0000313|EMBL:EMS69535.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] t rbh
Ger(x)C family germination protein
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_25
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33952..35028
DNA (1077bp) protein (359aa)
Spore germination protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MKB9_ALKOO rbh
spore germination protein
Spore germination protein {ECO:0000313|EMBL:ABW20251.1}; Flags: Precursor;; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus rbh
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_26
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35271..36905
DNA (1635bp) protein (545aa)
Peptide-binding protein n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I125_9CLOT rbh
Peptide-binding protein {ECO:0000313|EMBL:ETA79563.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 232.1.;" rbh
oppA; oligopeptide transporter subunit ; periplasmic-binding component of ABC superfamily
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_27
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37038..37967
DNA (930bp) protein (310aa)
Peptide ABC transporter permease n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I2Z1_9CLOT rbh
Peptide ABC transporter permease {ECO:0000313|EMBL:ETA79564.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 2 rbh
oppB; Oligopeptide transport system permease protein OppB
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_28
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37967..38923
DNA (957bp) protein (319aa)
Diguanylate cyclase n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I001_9CLOT rbh
Diguanylate cyclase {ECO:0000313|EMBL:ETA79565.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragilis 232.1.;" rbh
dppC; Dipeptide transport system permease protein DppC
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_29
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38936..39937
DNA (1002bp) protein (334aa)
Oligopeptide ABC transporter (ATP-binding protein) n=1 Tax=Clostridium ultunense Esp RepID=M1YQA4_9CLOT rbh
Oligopeptide ABC transporter (ATP-binding protein) {ECO:0000313|EMBL:CCQ92705.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostri rbh
oppD; Oligopeptide transport ATP-binding protein OppD
NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_scaffold_14_30
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39937..40899
DNA (963bp) protein (321aa)
ykfD; putative oligopeptide transport ATP-binding protein YkfD (EC:3.6.3.-)
Putative cell wall oligopeptide ABC transporter (ATP binding protein) n=1 Tax=Clostridium ultunense Esp RepID=M1Z3V1_9CLOT rbh
Tax=BJP_IG2102_Clostridiales_34_350 rbh
Displaying items 1-30 of 75 in total

View Taxonomy