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NECEvent2014_4_5_Clostridium_perfringens_28_8

NECEvent2014_4_5_Clostridium_perfringens_29_9
In projects: NECEvent2014_4_5

Consensus taxonomy: Clostridium perfringens  →  Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Displaying items 451-500 of 620 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_5_scaffold_3208 174_005_scaffold_3208
Species: Clostridium perfringens (100%)
3 1489 bp 28.61 5.54 81.60
NECEvent2014_4_5_scaffold_2230 174_005_scaffold_2230
Species: Clostridium perfringens (100%)
1 2530 bp 25.97 5.75 81.46
NECEvent2014_4_5_scaffold_776 174_005_scaffold_776
Species: Clostridium perfringens (100%)
11 10212 bp 27.37 8.89 81.40
NECEvent2014_4_5_scaffold_3589 174_005_scaffold_3589
Species: Clostridium perfringens (100%)
1 1272 bp 22.56 4.01 81.37
NECEvent2014_4_5_scaffold_1462 174_005_scaffold_1462
Species: Clostridium perfringens (75%)
4 4545 bp 29.37 7.95 81.32
NECEvent2014_4_5_scaffold_1797 174_005_scaffold_1797
Species: Clostridium perfringens (100%)
5 3409 bp 25.46 6.51 81.23
NECEvent2014_4_5_scaffold_2632 174_005_scaffold_2632
Species: Clostridium perfringens (100%)
2 1976 bp 29.50 6.38 81.22
NECEvent2014_4_5_scaffold_2835 174_005_scaffold_2835
Species: Clostridium perfringens (100%)
2 1785 bp 26.05 8.24 81.18
NECEvent2014_4_5_scaffold_1982 174_005_scaffold_1982
Species: Clostridium perfringens (100%)
4 2950 bp 25.63 7.88 81.15
NECEvent2014_4_5_scaffold_2959 174_005_scaffold_2959
Species: Clostridium perfringens (100%)
3 1660 bp 29.76 6.42 81.14
NECEvent2014_4_5_scaffold_1888 174_005_scaffold_1888
Species: Clostridium perfringens (100%)
3 3191 bp 26.98 8.18 81.13
NECEvent2014_4_5_scaffold_1332 174_005_scaffold_1332
Species: Clostridium perfringens (100%)
5 5127 bp 28.75 8.57 81.04
NECEvent2014_4_5_scaffold_2984 174_005_scaffold_2984
Species: Clostridium perfringens (100%)
4 1638 bp 24.73 5.77 80.95
NECEvent2014_4_5_scaffold_1734 174_005_scaffold_1734
Species: Clostridium perfringens (100%)
6 3587 bp 26.60 6.23 80.88
NECEvent2014_4_5_scaffold_3688 174_005_scaffold_3688
Species: Clostridium perfringens (100%)
2 1228 bp 25.00 5.62 80.86
NECEvent2014_4_5_scaffold_2884 174_005_scaffold_2884
Species: Clostridium perfringens (50%)
2 1743 bp 26.45 7.57 80.72
NECEvent2014_4_5_scaffold_2142 174_005_scaffold_2142
Species: Clostridium perfringens (100%)
3 2658 bp 26.30 7.22 80.70
NECEvent2014_4_5_scaffold_1577 174_005_scaffold_1577
Species: Clostridium perfringens (80%)
5 4078 bp 26.70 7.95 80.65
NECEvent2014_4_5_scaffold_2335 174_005_scaffold_2335
Species: Clostridium perfringens (75%)
4 2367 bp 30.29 9.70 80.61
NECEvent2014_4_5_scaffold_3072 174_005_scaffold_3072
Species: Clostridium perfringens (100%)
2 1568 bp 25.64 6.22 80.55
NECEvent2014_4_5_scaffold_990 174_005_scaffold_990
Species: Clostridium perfringens (100%)
7 7812 bp 28.34 7.03 80.49
NECEvent2014_4_5_scaffold_1345 174_005_scaffold_1345
Species: Clostridium perfringens (100%)
6 5067 bp 29.39 9.44 80.40
NECEvent2014_4_5_scaffold_1302 174_005_scaffold_1302
Species: Clostridium perfringens (100%)
5 5306 bp 26.23 9.47 80.40
NECEvent2014_4_5_scaffold_3287 174_005_scaffold_3287
Species: Clostridium botulinum (50%)
2 1439 bp 23.42 7.30 80.26
NECEvent2014_4_5_scaffold_1816 174_005_scaffold_1816
Species: Clostridium perfringens (100%)
3 3364 bp 28.63 7.67 80.26
NECEvent2014_4_5_scaffold_403 174_005_scaffold_403
Species: Clostridium perfringens (57.14%)
21 18762 bp 29.66 8.79 80.26
NECEvent2014_4_5_scaffold_3358 174_005_scaffold_3358
Species: Clostridium perfringens (100%)
2 1395 bp 28.03 6.56 80.22
NECEvent2014_4_5_scaffold_2291 174_005_scaffold_2291
Species: Clostridium perfringens (100%)
3 2425 bp 30.52 11.75 80.16
NECEvent2014_4_5_scaffold_2799 174_005_scaffold_2799
Species: Clostridium perfringens (100%)
1 1812 bp 30.19 5.71 80.13
NECEvent2014_4_5_scaffold_3348 174_005_scaffold_3348
Species: Clostridium perfringens (100%)
1 1404 bp 28.85 6.94 80.13
NECEvent2014_4_5_scaffold_2600 174_005_scaffold_2600
Species: Clostridium perfringens (100%)
2 2012 bp 25.55 7.08 79.92
NECEvent2014_4_5_scaffold_2259 174_005_scaffold_2259
Species: Clostridium perfringens (100%)
3 2474 bp 26.88 7.46 79.91
NECEvent2014_4_5_scaffold_904 174_005_scaffold_904
Species: Clostridium perfringens (77.78%)
9 8636 bp 27.42 6.65 79.83
NECEvent2014_4_5_scaffold_1954 174_005_scaffold_1954
Species: Clostridium perfringens (100%)
2 3019 bp 30.04 9.79 79.79
NECEvent2014_4_5_scaffold_1625 174_005_scaffold_1625
Species: Clostridium perfringens (100%)
4 3941 bp 28.93 6.93 79.78
NECEvent2014_4_5_scaffold_886 174_005_scaffold_886
Species: Clostridium perfringens (100%)
6 8847 bp 28.82 8.88 79.76
NECEvent2014_4_5_scaffold_1169 174_005_scaffold_1169
Species: Clostridium perfringens (100%)
6 6086 bp 26.42 7.42 79.71
NECEvent2014_4_5_scaffold_2918 174_005_scaffold_2918
Species: Clostridium perfringens (100%)
2 1707 bp 27.01 4.04 79.61
NECEvent2014_4_5_scaffold_1662 174_005_scaffold_1662
Species: Clostridium perfringens (100%)
4 3840 bp 25.55 6.29 79.61
NECEvent2014_4_5_scaffold_2997 174_005_scaffold_2997
Species: Clostridium perfringens (66.67%)
3 1625 bp 27.02 5.26 79.57
NECEvent2014_4_5_scaffold_1661 174_005_scaffold_1661
Species: Clostridium perfringens (100%)
3 3843 bp 31.07 9.17 79.55
NECEvent2014_4_5_scaffold_1720 174_005_scaffold_1720
Species: Clostridium perfringens (100%)
2 3645 bp 29.14 6.95 79.42
NECEvent2014_4_5_scaffold_1817 174_005_scaffold_1817
Species: Clostridium perfringens (100%)
4 3363 bp 26.02 6.65 79.39
NECEvent2014_4_5_scaffold_1269 174_005_scaffold_1269
Species: Clostridium perfringens (100%)
4 5526 bp 27.69 8.79 79.37
NECEvent2014_4_5_scaffold_4162 174_005_scaffold_4162
Species: Clostridium perfringens (100%)
2 1040 bp 27.40 7.50 79.33
NECEvent2014_4_5_scaffold_3002 174_005_scaffold_3002
Species: Clostridium perfringens (100%)
2 1622 bp 27.50 5.27 79.16
NECEvent2014_4_5_scaffold_2676 174_005_scaffold_2676
Species: Clostridium perfringens (100%)
3 1932 bp 25.78 6.21 78.88
NECEvent2014_4_5_scaffold_3226 174_005_scaffold_3226
Species: Clostridium perfringens (100%)
3 1478 bp 21.24 3.65 78.76
NECEvent2014_4_5_scaffold_2241 174_005_scaffold_2241
Species: Clostridium perfringens (100%)
2 2511 bp 31.10 11.11 78.73
NECEvent2014_4_5_scaffold_3111 174_005_scaffold_3111
Species: Clostridium perfringens (80%)
5 1542 bp 21.21 5.84 78.60
Displaying items 451-500 of 620 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.