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NECEvent2014_4_7_scaffold_1309_2

Organism: NECEvent2014_4_7_Clostridium_7_2_43FAA-rel_28_17_lowerCov

near complete RP 48 / 55 MC: 6 BSCG 46 / 51 MC: 5 ASCG 15 / 38 MC: 2
Location: comp(657..4190)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase similarity UNIPROT
DB: UniProtKB
  • Identity: 96.2
  • Coverage: 999.99
  • Bit_score: 2242
  • Evalue 0.0
rpoC; DNA-directed RNA polymerase, beta' subunit (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 88.5
  • Coverage: 999.99
  • Bit_score: 2086
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H649_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 96.3
  • Coverage: 999.99
  • Bit_score: 2243
  • Evalue 0.0
  • rbh

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Taxonomy

Clostridium sp. 7_2_43FAA → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 3534
TTGTTTGAATTGAATAATTTTGATGCTATACAAATAGGTTTAGCTTCACCAGATCAAATAAGAGAATGGTCAAGAGGTGAAGTTAAAAAACCTGAAACAATAAACTATAGAACCTTAAAACCGGAAAGAGATGGTCTATTCTGTGAAAGAATTTTTGGACCTATCAAAGACTGGGAATGTCATTGTGGAAAGTACAAAAGAGTAAGATATAAGGGCATAGTTTGTGATAGATGTGGAGTTGAGGTTACTAAGGCTAAGGTAAGAAGAGAAAGAATGGGGCATATTGAACTGGCTGCCCCAGTTTCTCACATTTGGTACTTCAAAGGAATTCCATCAAGAATGGGATTACTTTTAGATATGTCACCAAGAGCTTTAGAAAAAATATTATACTTCGCTTCATATGTTGTAATAGATCCTAAAGAAACACCATTATTAAAGAAGCAACTTCTTAATGAAAAAGAATATAGAGAAGCAGCAGACAAATATGGTGAAGAAAGCTTTGTAGCTGGAATGGGAGCAGAAGCAGTTCAAGAATTACTTGGAGAAATCGACTTAGAATCACAATCAAGAGATCTTAAAGAAGAATTAAAAGTAAGCACTGGACAAAAGAAAGTTAGAATAATAAGAAGACTAGAAGTTGTTGAGTCTTTTAGAAAATCAGGAAATGATCCAAGATGGATGGTTATTAATGTAATACCAGTAATACCTCCTGATTTAAGACCAATGGTTCAATTAGATGGTGGAAGATTTGCTACTTCAGATTTAAATGATTTATATAGAAGAGTTATTAATAGAAATAACAGACTTAAAAAATTATTAGATCTAGGAGCACCTGATATTATTGTTAGAAATGAAAAAAGAATGCTTCAAGAAGCAGTTGATGCATTAATAGACAATGGTAGAAGAGGAAGACCTGTAACAGGACCTGGAAACAGACCTCTTAAGTCATTATCAGATATGCTTAAAGGTAAGCAAGGTAGATTTAGACAAAACTTACTTGGTAAGAGAGTTGACTATTCTGGTAGATCAGTTATAGTTGTTGGACCAGAATTAAAAATGTACCAATGTGGACTTCCAAAAGAAATGGCTTTAGAATTATTTAAGCCTTTTGTAATGAAGAAGTTAGTTGAAGATGGTGTAGCACACAATATTAAGAGTGCGAAGAGAATGGTTGAAAGAGTTAATAATCAAGTATGGGATGTACTTGAAGAAGTTATTACTGATCATCCAGTCTTATTAAACCGTGCACCTACTCTACATAGACTTGGTATTCAAGCTTTCCAACCAATTTTAGTAGAAGGTAGAGCTATAAAATTACATCCATTAGTATGTACAGCATATAATGCTGACTTTGATGGTGACCAAATGGCTGTTCACGTTCCATTATCAGTTGAAGCTCAAGCAGAAGCAAGATTCTTAATGTTAGCTGCTGGTAATATAATGAAACCTTCAGATGGTAAACCAGTTTGTGTACCTACACAGGATATGGTTTTAGGTTCATACTATTTAACTATGGATAAGTCTGGAGCTAAAGGTGAAGGAAAAGTATTTGCTTCTAAAGATGAGGCTATAATGGCTTATGAAGTAGGAGAAATAGCTATACATGCTGAAATCAAAGTAAGGATGTTTAAAGAAATAAATGGAGAGGTAAGATCAGGAATAATTACTACAACTGTAGGTAAAATAATATTCAATGAATCTATCCCTCAAGATTTAGGTTTTGTTAATAGAGATAATAAAGATGAAGAATTTAACTTAGAAGTTGATTTCTTAATAACTAAAAAGTCATTAGGAAAGATAATAGATAAATGTTATACTGTTCACGGTCCTACAAATACTTCTATAATGTTAGATAAGATAAAAGCTTTAGGATATCACTATTCATCAATTGGAGCTGTAACAGTAGCTGCTTCCGATATGATAGTACCTGAGGCTAAATATACTCTTCTTAAAGAAGCTGATGAAACGGTTGAGAAAATTGAGAAGATGTATAAGAGAGGTTTCATATCAGAAGAAGAAAGATATGAAAGAGTTATAGAGAAATGGACTAAGACAACAGAAGATGTAGCTGATGCACTTATGGATAGCTTGGATAAATTTAACCCAATATTCATGATGGCTGACTCTGGAGCCAGAGGTTCTAAATCTCAGATCAAGCAATTAGCAGGTATGAGAGGACTTATGGCAAGTCCAACTGGTAAGATTATAGAATTACCAATCAGAGCTTCATTTAGAGAAGGTCTTGAAGTATTAGAATACTTTATTTCTACACACGGAGCTAGAAAAGGTAATGCTGATACAGCTCTTAAGACAGCTGACTCAGGATACTTAACAAGAAGACTTGTTGACGTATCACAAGATGTTATAGTAAGAGAAATAGATTGTGGTACAACAGAAGGTATCTATGTTTCAGAAATCAAAGAAGGTAATGAAGCAATCGAAGGATTAGCTGAAAGACTTTATGGTAGATATACAGCAGAGCCAATTATAAATCCAGAAACTGGAGAGGTTATGGTAGAAGCTGATGAATATATGGATTTAGCTACTGCTGAAAAAGTTGCAGCTACTGGAATTAAAAAAGTTAAAATTAGATCTGTATTTACATGTAAGTGTAAAGTTGGAGTATGTTCTAAGTGTTATGGTATGAACATGGCAACAGCACAAAAAATAAATATAGGTGAAGCTGTAGGAATTATAGCAGCTCAATCAATCGGAGAACCTGGTACTCAGCTTACAATGAGAACATTCCACACAGGGGGAGTAGTTGGAGCCGATATCACACAAGGTCTTCCAAGAGTTGAAGAGTTATTTGAAGCTAGAAAGCCAAAGGGATTAGCAATAGTAACTGAAATTCCAGGTACAGTAAGAGTTGAAGAAACTAAGAAAAAGAGAACTGTATTTGTAACATCTGAAGATGGTGAAGAAAGAAGTTATGAAATTCCATTTGGATCAAGATTAAAAGTATCAGATGATGATATTATCGAAGCTGGTGATGAGATTACTGAAGGTTCAGTAAACCCTCATGATATTGCAGCTATTAAAGGTATAGATGGTGCAAGAAAATATCTATTATCAGAAGTACAAAAAGTTTATAGACTACAAGGTGTTGATATCAATGATAAGCACTTAGAAGTAGTTGTTAGACAAATGACAAGAAAAGTTAAAGTTTTAGATTCAGGTGATACTGAACTATTACCAGGTACTATGATAGATATGTTTGACTTTGAAGAAGAAAATGCTAGAGTAAGAGAATTTGGCGGTGAAGAAGCTAAGGGAGAGCAAGCACTACTTGGTATAACTAAAGCAGCGTTAGCTACAGATAGTTTCTTATCAGCAGCTTCATTCCAAGAAACTACTAGAGTTCTTACAGAAGCAGCTATCAAAGGAAAAATAGACCCATTAGTTGGATTGAAAGAAAATGTTATTATTGGTAAGTTAATACCAGCTGGTACTGGAATGATGAGATACAGAAATCTAAAGATAGATGTTGAGGATGTTCCAGTAGAAAATGAAGTTTTAGATTCAATAGAATAA
PROTEIN sequence
Length: 1178
LFELNNFDAIQIGLASPDQIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPIKDWECHCGKYKRVRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDMSPRALEKILYFASYVVIDPKETPLLKKQLLNEKEYREAADKYGEESFVAGMGAEAVQELLGEIDLESQSRDLKEELKVSTGQKKVRIIRRLEVVESFRKSGNDPRWMVINVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPKEMALELFKPFVMKKLVEDGVAHNIKSAKRMVERVNNQVWDVLEEVITDHPVLLNRAPTLHRLGIQAFQPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLAAGNIMKPSDGKPVCVPTQDMVLGSYYLTMDKSGAKGEGKVFASKDEAIMAYEVGEIAIHAEIKVRMFKEINGEVRSGIITTTVGKIIFNESIPQDLGFVNRDNKDEEFNLEVDFLITKKSLGKIIDKCYTVHGPTNTSIMLDKIKALGYHYSSIGAVTVAASDMIVPEAKYTLLKEADETVEKIEKMYKRGFISEEERYERVIEKWTKTTEDVADALMDSLDKFNPIFMMADSGARGSKSQIKQLAGMRGLMASPTGKIIELPIRASFREGLEVLEYFISTHGARKGNADTALKTADSGYLTRRLVDVSQDVIVREIDCGTTEGIYVSEIKEGNEAIEGLAERLYGRYTAEPIINPETGEVMVEADEYMDLATAEKVAATGIKKVKIRSVFTCKCKVGVCSKCYGMNMATAQKINIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVVGADITQGLPRVEELFEARKPKGLAIVTEIPGTVRVEETKKKRTVFVTSEDGEERSYEIPFGSRLKVSDDDIIEAGDEITEGSVNPHDIAAIKGIDGARKYLLSEVQKVYRLQGVDINDKHLEVVVRQMTRKVKVLDSGDTELLPGTMIDMFDFEEENARVREFGGEEAKGEQALLGITKAALATDSFLSAASFQETTRVLTEAAIKGKIDPLVGLKENVIIGKLIPAGTGMMRYRNLKIDVEDVPVENEVLDSIE*