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NECEvent2014_5_3_scaffold_222

Alias: 175_002_scaffold_222

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_5_3_scaffold_222_1
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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40..819
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EIM5_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:KJU72347.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
hypothetical protein
NECEvent2014_5_3_scaffold_222_2
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

835..1911
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HH23_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EEH98535.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
ATPase family protein
NECEvent2014_5_3_scaffold_222_3
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1929..3275
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BVT8_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EOR20810.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
hypothetical protein
NECEvent2014_5_3_scaffold_222_4
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3339..3995
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U5T3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ56447.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp.
hypothetical protein
NECEvent2014_5_3_scaffold_222_5
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4238..5272
DNA (1035bp) protein (345aa)
Putative ABC-type sugar transport system,periplasmic component n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FMU0_9CLOT rbh
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJU72037.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium b
periplasmic binding s and sugar binding domain of LacI family protein
NECEvent2014_5_3_scaffold_222_6
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5319..6860
DNA (1542bp) protein (514aa)
Galactose/methyl galactoside import ATP-binding protein MglA {ECO:0000256|HAMAP-Rule:MF_01717}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01717};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia;
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H414_9CLOT rbh
ABC transporter family protein
NECEvent2014_5_3_scaffold_222_7
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6877..7899
DNA (1023bp) protein (341aa)
Galactoside transport system permease protein MglC n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QBU4_9CLOT rbh
Galactoside transport system permease protein MglC {ECO:0000313|EMBL:EKY25411.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostrid
branched-chain amino acid transport system / permease component family protein
NECEvent2014_5_3_scaffold_222_8
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7908..8075
DNA (168bp) protein (56aa)
Uncharacterized protein {ECO:0000313|EMBL:AIY83058.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.
NECEvent2014_5_3_scaffold_222_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8239..9837
DNA (1599bp) protein (533aa)
Two component transcriptional regulator, AraC family n=1 Tax=Clostridium sp. DL-VIII RepID=G7LY61_9CLOT rbh
helix-turn-helix domain protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:AIY83751.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. S
NECEvent2014_5_3_scaffold_222_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9847..11631
DNA (1785bp) protein (595aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" s
Multi-sensor signal transduction histidine kinase n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CED5_9CLOT rbh
HAMP domain protein
NECEvent2014_5_3_scaffold_222_11
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11591..12583
DNA (993bp) protein (331aa)
Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=2 Tax=Clostridium saccharoperbutylacetonicum RepID=M1MUQ8_9CLOT
periplasmic binding s and sugar binding domain of LacI family protein
Periplasmic binding s and sugar binding domain of LacI family protein {ECO:0000313|EMBL:AIY83606.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium
NECEvent2014_5_3_scaffold_222_12
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12611..13654
DNA (1044bp) protein (348aa)
Sugar ABC transporter substrate-binding protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G5P7_CLOPA rbh
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJU72345.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium b
periplasmic binding domain protein
NECEvent2014_5_3_scaffold_222_13
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13700..14032)
DNA (333bp) protein (111aa)
HesB-like selenoprotein n=1 Tax=Clostridium colicanis 209318 RepID=N9XZ93_9CLOT
HesB-like selenofamily protein
Fe-S cluster assembly protein HesB {ECO:0000313|EMBL:KJU72056.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
NECEvent2014_5_3_scaffold_222_14
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14241..14996
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6FYR9_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:CDB14171.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
ribosomal RNA adenine dimethylase family protein
NECEvent2014_5_3_scaffold_222_15
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15094..17541)
DNA (2448bp) protein (816aa)
leuS; leucine--tRNA ligase (EC:6.1.1.4)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049, ECO:0000313|EMBL:AIY84261.1}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049, ECO:0000313|EMBL:AIY84261.1};; Leucyl-tRNA synthetase {ECO:0000256|HAM
Leucine--tRNA ligase n=1 Tax=Clostridium sp. CAG:221 RepID=R6FYS1_9CLOT rbh
NECEvent2014_5_3_scaffold_222_16
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17849..18745)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HD83_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH97320.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
traB family protein
NECEvent2014_5_3_scaffold_222_17
unknown

Not on your lists

comp(18832..18954)
DNA (123bp) protein (41aa)

This feature has no annotations

NECEvent2014_5_3_scaffold_222_18
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19159..19521
DNA (363bp) protein (121aa)
Putative Integral membrane protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EXT4_9CLOT
Putative Integral membrane protein {ECO:0000313|EMBL:CDG01056.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF
hypothetical protein
NECEvent2014_5_3_scaffold_222_19
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19569..20897)
DNA (1329bp) protein (443aa)
Amino acid permease-associated region n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JPQ0_CELLD rbh
amino acid permease
Amino acid permease-associated region {ECO:0000313|EMBL:ADZ83710.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticu
NECEvent2014_5_3_scaffold_222_20
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21170..21265
DNA (96bp) protein (32aa)
Reverse rubrerythrin-1 n=3 Tax=Clostridium colicanis 209318 RepID=N9Y3C6_9CLOT
Reverse rubrerythrin-1 {ECO:0000313|EMBL:ENZ02654.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
rubredoxin/rubrerythrin
Displaying 20 items

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