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NECEvent2014_6_4_scaffold_8

Alias: 176_004_scaffold_8

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Displaying items 1-30 of 168 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_4_scaffold_8_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(141..392)
DNA (252bp) protein (84aa)
SSU ribosomal protein S20p
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
NECEvent2014_6_4_scaffold_8_2

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589..2508
DNA (1920bp) protein (640aa)
Elongation factor 4 {ECO:0000313|EMBL:ETJ18605.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Elongation factor 4 {ECO:0000313|EMBL:ETJ18605.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Translation elongation factor LepA
NECEvent2014_6_4_scaffold_8_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2627..3751
DNA (1125bp) protein (375aa)
Putative coproporphyrinogen III oxidase of BS HemN-type, oxygen-independent , in heat shock gene cluster (EC:1.3.99.22)
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:EFE59594.1}; EC=1.3.99.22 {ECO:0000313|EMBL:EFE59594.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales;
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:EFE59594.1}; EC=1.3.99.22 {ECO:0000313|EMBL:EFE59594.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales;
NECEvent2014_6_4_scaffold_8_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3851..4828
DNA (978bp) protein (326aa)
Heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source=
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source=
NECEvent2014_6_4_scaffold_8_5

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4857..5489
DNA (633bp) protein (211aa)
Heat shock protein GrpE
Protein grpE {ECO:0000313|EMBL:ETJ18608.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Protein grpE {ECO:0000313|EMBL:ETJ18608.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_6_4_scaffold_8_6
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5545..7374
DNA (1830bp) protein (610aa)
dnaK; molecular chaperone DnaK
Chaperone protein DnaK {ECO:0000255|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000255|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000255|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000255|HAMAP
Chaperone protein DnaK {ECO:0000255|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000255|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000255|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000255|HAMAP
NECEvent2014_6_4_scaffold_8_7
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7519..8640
DNA (1122bp) protein (374aa)
molecular chaperone DnaJ
Chaperone protein DnaJ {ECO:0000255|HAMAP-Rule:MF_01152}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Chaperone protein DnaJ {ECO:0000255|HAMAP-Rule:MF_01152}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
NECEvent2014_6_4_scaffold_8_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8644..9582
DNA (939bp) protein (313aa)
Ribosomal protein L11 methyltransferase {ECO:0000255|HAMAP-Rule:MF_00735}; Short=L11 Mtase {ECO:0000255|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000255|HAMAP-Rule:MF_00735};; TaxID=176279 species="Bact
Ribosomal protein L11 methyltransferase {ECO:0000255|HAMAP-Rule:MF_00735}; Short=L11 Mtase {ECO:0000255|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000255|HAMAP-Rule:MF_00735};; TaxID=176279 species="Bact
prmA; ribosomal protein L11 methyltransferase
NECEvent2014_6_4_scaffold_8_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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9599..10336
DNA (738bp) protein (246aa)
Ribosomal RNA small subunit methyltransferase E (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphyl
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphyl
NECEvent2014_6_4_scaffold_8_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10342..11688
DNA (1347bp) protein (449aa)
tRNA methylthiotransferase YqeV {ECO:0000313|EMBL:EFE59601.1}; EC=1.8.-.- {ECO:0000313|EMBL:EFE59601.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Sta
tRNA methylthiotransferase YqeV {ECO:0000313|EMBL:EFE59601.1}; EC=1.8.-.- {ECO:0000313|EMBL:EFE59601.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Sta
hypothetical protein
NECEvent2014_6_4_scaffold_8_11
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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11814..11990
DNA (177bp) protein (59aa)
rpsU; 30S ribosomal protein S21
30S ribosomal protein S21 {ECO:0000255|HAMAP-Rule:MF_00358}; TaxID=196620 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus (strain MW2).;"
30S ribosomal protein S21 {ECO:0000255|HAMAP-Rule:MF_00358}; TaxID=196620 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus (strain MW2).;"
NECEvent2014_6_4_scaffold_8_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12836..13546
DNA (711bp) protein (237aa)
hypothetical protein
Nodulation efficiency protein D {ECO:0000313|EMBL:EFE59603.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Nodulation efficiency protein D {ECO:0000313|EMBL:EFE59603.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
NECEvent2014_6_4_scaffold_8_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13561..14550
DNA (990bp) protein (330aa)
hypothetical protein
UPF0365 protein HMPREF0794_0425 {ECO:0000256|HAMAP-Rule:MF_01562}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey)
UPF0365 protein HMPREF0794_0425 {ECO:0000256|HAMAP-Rule:MF_01562}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey)
NECEvent2014_6_4_scaffold_8_14

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14566..15249
DNA (684bp) protein (228aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETJ18618.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Uncharacterized protein {ECO:0000313|EMBL:ETJ18618.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_6_4_scaffold_8_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15535..16482
DNA (948bp) protein (316aa)
Phosphate starvation-inducible protein PhoH,predicted ATPase
PhoH family protein {ECO:0000313|EMBL:AAW54466.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
PhoH family protein {ECO:0000313|EMBL:AAW54466.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
NECEvent2014_6_4_scaffold_8_16

Not on your lists

16483..16950
DNA (468bp) protein (156aa)
hypothetical protein
Putative rRNA maturation factor {ECO:0000313|EMBL:ETJ18620.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Putative rRNA maturation factor {ECO:0000313|EMBL:ETJ18620.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_6_4_scaffold_8_17

Not on your lists

16952..17308
DNA (357bp) protein (119aa)
dgkA; diacylglycerol kinase (EC:2.7.1.107)
Diacylglycerol kinase {ECO:0000313|EMBL:ETJ18621.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Diacylglycerol kinase {ECO:0000313|EMBL:ETJ18621.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_6_4_scaffold_8_18

Not on your lists

17308..17712
DNA (405bp) protein (135aa)
Cytidine deaminase (EC:3.5.4.5)
Cytidine deaminase {ECO:0000313|EMBL:ETJ18622.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Cytidine deaminase {ECO:0000313|EMBL:ETJ18622.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_6_4_scaffold_8_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17712..18611
DNA (900bp) protein (300aa)
era; GTP-binding protein Era
GTPase Era {ECO:0000255|HAMAP-Rule:MF_00367}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
GTPase Era {ECO:0000255|HAMAP-Rule:MF_00367}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
NECEvent2014_6_4_scaffold_8_20

Not on your lists

18637..19398
DNA (762bp) protein (254aa)
recO; DNA repair protein RecO
DNA repair protein RecO {ECO:0000313|EMBL:ETJ18624.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
DNA repair protein RecO {ECO:0000313|EMBL:ETJ18624.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_6_4_scaffold_8_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


comp(19528..20919)
DNA (1392bp) protein (464aa)
Glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:000025
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:000025
NECEvent2014_6_4_scaffold_8_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21387..21878
DNA (492bp) protein (164aa)
ccpN; transcriptional repressor CcpN
CBS domain protein {ECO:0000313|EMBL:AAW54451.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
CBS domain protein {ECO:0000313|EMBL:AAW54451.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
NECEvent2014_6_4_scaffold_8_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21890..22708
DNA (819bp) protein (273aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00
ATP/GTP-binding protein, SA1392 homolog rbh
NECEvent2014_6_4_scaffold_8_24
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22882..24678
DNA (1797bp) protein (599aa)
DNA primase (EC:2.7.7.-)
DNA primase {ECO:0000255|HAMAP-Rule:MF_00974}; EC=2.7.7.- {ECO:0000255|HAMAP-Rule:MF_00974};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus
DNA primase {ECO:0000255|HAMAP-Rule:MF_00974}; EC=2.7.7.- {ECO:0000255|HAMAP-Rule:MF_00974};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus
NECEvent2014_6_4_scaffold_8_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24949..26055
DNA (1107bp) protein (369aa)
RNA polymerase sigma factor RpoD
RNA polymerase sigma factor SigA {ECO:0000255|HAMAP-Rule:MF_00963}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 1
RNA polymerase sigma factor SigA {ECO:0000255|HAMAP-Rule:MF_00963}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 1
NECEvent2014_6_4_scaffold_8_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26210..26899
DNA (690bp) protein (230aa)
Putative tRNA-m1A22 methylase
Uncharacterized protein {ECO:0000313|EMBL:EFE59617.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Uncharacterized protein {ECO:0000313|EMBL:EFE59617.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
NECEvent2014_6_4_scaffold_8_27
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26889..27989
DNA (1101bp) protein (367aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1403935 species="Bacteri
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1403935 species="Bacteri
FIG060293: Hypothetical protein
NECEvent2014_6_4_scaffold_8_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28024..29370
DNA (1347bp) protein (449aa)
ATP-dependent RNA helicase YqfR
ATP-dependent RNA helicase, DEAD/DEAH box family {ECO:0000313|EMBL:AAW54537.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (s
ATP-dependent RNA helicase, DEAD/DEAH box family {ECO:0000313|EMBL:AAW54537.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (s
NECEvent2014_6_4_scaffold_8_29
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29380..30270
DNA (891bp) protein (297aa)
Endonuclease IV (EC:3.1.21.2)
Probable endonuclease 4 {ECO:0000255|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000255|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000255|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000255|HAMA
Probable endonuclease 4 {ECO:0000255|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000255|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000255|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000255|HAMA
NECEvent2014_6_4_scaffold_8_30
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

30488..31270
DNA (783bp) protein (261aa)
Zinc ABC transporter, ATP-binding protein ZnuC
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETJ12427.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETJ12427.1}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
Displaying items 1-30 of 168 in total

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