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NECEvent2014_6_5_scaffold_533

Alias: 176_005_scaffold_533

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_5_scaffold_533_trna_3
unknown

Not on your lists

comp(23..96)
DNA (74bp)
transferRNA
NECEvent2014_6_5_scaffold_533_trna_2
unknown

Not on your lists

comp(105..177)
DNA (73bp)
transferRNA
NECEvent2014_6_5_scaffold_533_trna_1
unknown

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comp(202..287)
DNA (86bp)
transferRNA
NECEvent2014_6_5_scaffold_533_1
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(518..922)
DNA (405bp) protein (135aa)
RNA binding protein, contains ribosomal protein S1 domain {ECO:0000313|EMBL:KJZ84730.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="
RNA binding protein
NECEvent2014_6_5_scaffold_533_2
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1063..1359)
DNA (297bp) protein (99aa)
Uncharacterized protein {ECO:0000313|EMBL:KJZ83344.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
septum formation initiator
NECEvent2014_6_5_scaffold_533_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1433..1828)
DNA (396bp) protein (132aa)
Spore cortex biosynthesis protein YabQ {ECO:0000313|EMBL:ENZ29594.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricu
yabQ; spore cortex biosynthesis protein YabQ
NECEvent2014_6_5_scaffold_533_4
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1838..2131)
DNA (294bp) protein (98aa)
Uncharacterized protein {ECO:0000313|EMBL:KJZ84738.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
YabP family protein
NECEvent2014_6_5_scaffold_533_5
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2310..2570)
DNA (261bp) protein (87aa)
Uncharacterized protein {ECO:0000313|EMBL:KJZ84737.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
ribosome-associated heat shock protein implicated in recycling of 50S subunit
NECEvent2014_6_5_scaffold_533_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2635..2910)
DNA (276bp) protein (92aa)
hup; DNA-binding protein HU
DNA-binding protein HU {ECO:0000313|EMBL:ENZ29597.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
NECEvent2014_6_5_scaffold_533_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3128..4579)
DNA (1452bp) protein (484aa)
MazG family protein {ECO:0000313|EMBL:ENZ29598.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
MazG family protein rbh
NECEvent2014_6_5_scaffold_533_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4595..6133)
DNA (1539bp) protein (513aa)
Putative stage V sporulation protein B {ECO:0000313|EMBL:EEP52558.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricu
spoVB1; stage V sporulation protein B
NECEvent2014_6_5_scaffold_533_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6258..6809)
DNA (552bp) protein (184aa)
Stage V sporulation protein T {ECO:0000313|EMBL:ENZ29600.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;
spoVT; stage V sporulation protein T
NECEvent2014_6_5_scaffold_533_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7015..8046)
DNA (1032bp) protein (344aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridiu
prsA1; foldase protein PrsA (EC:5.2.1.8)
NECEvent2014_6_5_scaffold_533_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8172..11672)
DNA (3501bp) protein (1167aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=997898 species="Bacteria; Fi
mfd; transcription-repair-coupling factor Mfd (EC:3.6.4.-)
NECEvent2014_6_5_scaffold_533_12
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11687..12262)
DNA (576bp) protein (192aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBa
pth; peptidyl-tRNA hydrolase Pth (EC:3.1.1.29)
NECEvent2014_6_5_scaffold_533_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12298..13719)
DNA (1422bp) protein (474aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" so
integral membrane sensor signal transduction histidine kinase
NECEvent2014_6_5_scaffold_533_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13720..14406)
DNA (687bp) protein (229aa)
Transcriptional regulatory protein ResD {ECO:0000313|EMBL:EEP52495.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyric
srrA1; transcriptional regulatory protein SrrA
NECEvent2014_6_5_scaffold_533_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14513..15478)
DNA (966bp) protein (322aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosph
ribose-phosphate pyrophosphokinase
NECEvent2014_6_5_scaffold_533_16

Not on your lists

comp(15526..16896)
DNA (1371bp) protein (457aa)
glmU: bifunctional protein GlmU (EC:2.7.7.23 2.3.1.157)
Bifunctional protein GlmU {ECO:0000313|EMBL:ETJ16536.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
NECEvent2014_6_5_scaffold_533_17

Not on your lists

comp(17120..17395)
DNA (276bp) protein (92aa)
Uncharacterized protein {ECO:0000313|EMBL:ETJ16537.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
SpoVG family protein
NECEvent2014_6_5_scaffold_533_18
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17604..18419)
DNA (816bp) protein (272aa)
Adenine phosphoribosyltransferase {ECO:0000313|EMBL:KJZ84700.1}; EC=2.4.2.7 {ECO:0000313|EMBL:KJZ84700.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clos
pur operon repressor
Displaying 21 items

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