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NECEvent2014_6_6_Clostridiales_50_23_scaffold_175_11

Organism: NECEvent2014_6_6_Clostridiales_50_23_plum

near complete RP 47 / 55 MC: 2 BSCG 46 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 5221..6177

Top 3 Functional Annotations

Value Algorithm Source
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 62.9
  • Coverage: 318.0
  • Bit_score: 393
  • Evalue 6.10e-107
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase similarity UNIPROT
DB: UniProtKB
  • Identity: 62.9
  • Coverage: 318.0
  • Bit_score: 393
  • Evalue 3.00e-106
  • rbh
DNA-directed RNA polymerase subunit alpha n=2 Tax=Clostridium RepID=D8GIM7_CLOLD similarity UNIREF
DB: UNIREF100
  • Identity: 62.9
  • Coverage: 318.0
  • Bit_score: 393
  • Evalue 2.10e-106
  • rbh

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Taxonomy

Clostridium autoethanogenum → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 957
ATGATTGAATTTGACAAGTTTGGAATCGAAGAACGCAAAACACCTGAGTCCGGCGATTGCTATGGCGAATTTGTCATCGAACCGTTGGAACACGGTTTCGGCGTCACCCTAGGCAACGCCCTCAGACGTATTTTGCTCTCCTCTATTCCGGGAGCTGCCGTCACTTCTGTCAAAATTGACGGTGTCCTACACGAATTTTCGACGGTGCCCGGTGTCAAGGAAGACGTTGCCGAAATCATTTTAAATATCAAGCAGCTGGCTTTAAAATGTGACCACGATGAAGCTCAGACCATCATCATTAACGCCACAGAAGAAGGCGAAGTGACCGGTGCTGACATTCTCACGACAGAAGCCGTGGAAGTAATCAATAAAGATTTACACATCGCCACCATGGACAAAGACAGCCGCCTGTACATTGAAATGGTTGTTGAAACCGGCAACGGATATGTGTCTGCTGAAAAGAACAAGAGCAAAAACGATGAATTGCCCATTGGGACCATTCCCATCGATTCCATCTATACGCCGGTGCACAAAGTGAATTTTTCCGTCGAGGATACCCGTGTTGGCCAGGATACTGAAAAAGATCGCCTGATGCTCACCATTGGCACCAACGGCAACCTAACGCCGACAGAAGCCTTATCGTGGGCAGCACGCATCTTAACCGACCACCTTGAGCCGTTCATAAAGCTCAAAGAGGGCATGGAAGATACGGCCATCATGATTGAAAAAGAAGAAGAAGAGAAAGACAAAGTGCTGGACATGACCATTGAAGAGCTGGATCTCTCCGTGCGCAGCTACAACTGCCTCAAGCGAGCCGGCATCAATACAGTCCTTGAACTGACGCAAAAAACCAAGGATGAAATGATGAAAGTCAGAAACCTGGGTAAAAAATCGTTAGAAGAAGTGACTGAAAAAATGGGCGCACTTGGCCTCTCTCTCAAATCCAATGATGAGTAA
PROTEIN sequence
Length: 319
MIEFDKFGIEERKTPESGDCYGEFVIEPLEHGFGVTLGNALRRILLSSIPGAAVTSVKIDGVLHEFSTVPGVKEDVAEIILNIKQLALKCDHDEAQTIIINATEEGEVTGADILTTEAVEVINKDLHIATMDKDSRLYIEMVVETGNGYVSAEKNKSKNDELPIGTIPIDSIYTPVHKVNFSVEDTRVGQDTEKDRLMLTIGTNGNLTPTEALSWAARILTDHLEPFIKLKEGMEDTAIMIEKEEEEKDKVLDMTIEELDLSVRSYNCLKRAGINTVLELTQKTKDEMMKVRNLGKKSLEEVTEKMGALGLSLKSNDE*