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NECEvent2014_6_6_Clostridiales_50_23_scaffold_175

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_6_Clostridiales_50_23_scaffold_175_1
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..82
DNA (81bp) protein (27aa)
50S ribosomal protein L30 n=1 Tax=Clostridium sp. CAG:138 RepID=R6AQF6_9CLOT
50S ribosomal protein L30; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
ribosomal protein L30, bacterial/organelle
NECEvent2014_6_6_Clostridiales_50_23_scaffold_175_2
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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93..278
DNA (186bp) protein (62aa)
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00032272}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environ
ribosomal protein L30, bacterial/organelle
NECEvent2014_6_6_Clostridiales_50_23_scaffold_175_3
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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296..745
DNA (450bp) protein (150aa)
50S ribosomal protein L15 n=1 Tax=Bacillus massiliosenegalensis RepID=UPI00030CEF54
rplO; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000255|HAMAP-Rule:MF_01341}; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium therm
NECEvent2014_6_6_Clostridiales_50_23_scaffold_175_4
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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745..1995
DNA (1251bp) protein (417aa)
Protein translocase subunit SecY n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TC76_HELMI rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clo rbh
secY; preprotein translocase subunit SecY
NECEvent2014_6_6_Clostridiales_50_23_scaffold_175_5
Desulfitobacterium metallireducens, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2012..2662
DNA (651bp) protein (217aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU0033 rbh
Adenylate kinase n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GHE7_9FIRM rbh
adenylate kinase
NECEvent2014_6_6_Clostridiales_50_23_scaffold_175_6
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2659..3408
DNA (750bp) protein (250aa)
map2; methionine aminopeptidase type I (EC:3.4.11.18)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974 rbh
Methionine aminopeptidase n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B156_CLOA9 rbh
NECEvent2014_6_6_Clostridiales_50_23_scaffold_175_7
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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3433..3648
DNA (216bp) protein (72aa)
Translation initiation factor IF-1 n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6ICW3_9FIRM
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="
infA; putative translation initiation factor IF-1
NECEvent2014_6_6_Clostridiales_50_23_scaffold_175_8
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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3803..4171
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6U1D9_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
rpsM; 30S ribosomal protein S13
NECEvent2014_6_6_Clostridiales_50_23_scaffold_175_9
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4186..4584
DNA (399bp) protein (133aa)
30S ribosomal protein S11 n=1 Tax=Sulfobacillus thermosulfidooxidans RepID=UPI00036FE120
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012
30S ribosomal protein S11
NECEvent2014_6_6_Clostridiales_50_23_scaffold_175_10
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

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4595..5188
DNA (594bp) protein (198aa)
30S ribosomal protein S4 n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MJ23_9FIRM
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
SSU ribosomal protein S4P
NECEvent2014_6_6_Clostridiales_50_23_scaffold_175_11
Clostridium autoethanogenum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5221..6177
DNA (957bp) protein (319aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase rbh
DNA-directed RNA polymerase subunit alpha n=2 Tax=Clostridium RepID=D8GIM7_CLOLD rbh
NECEvent2014_6_6_Clostridiales_50_23_scaffold_175_12
Peptostreptococcaceae bacterium ACC19a, Clostridiales, Clostridia, Firmicutes, Bacteria

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6192..6530
DNA (339bp) protein (113aa)
50S ribosomal protein L17 n=1 Tax=Eubacteriaceae bacterium ACC19a RepID=G9WXM8_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=796937 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Pept
50S ribosomal protein L17P
NECEvent2014_6_6_Clostridiales_50_23_scaffold_175_13
Peptoniphilus duerdenii, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6856..7575
DNA (720bp) protein (240aa)
Copper amine oxidase domain protein n=1 Tax=Peptoniphilus duerdenii ATCC BAA-1640 RepID=E0NKE4_9FIRM
Copper amine oxidase domain protein {ECO:0000313|EMBL:EFM25751.1}; TaxID=862517 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus duerd
hypothetical protein
NECEvent2014_6_6_Clostridiales_50_23_scaffold_175_14
Anaerococcus vaginalis, Anaerococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7655..8038
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HUJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU12618.1}; TaxID=655811 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Anaerococcus.;" source="Anaerococcus vaginalis ATCC 5117
NECEvent2014_6_6_Clostridiales_50_23_scaffold_175_15
Clostridiales bacterium S7-1-4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8147..8773)
DNA (627bp) protein (209aa)
Response regulator receiver domain protein n=1 Tax=Peptoniphilus sp. BV3AC2 RepID=U7V1F2_9FIRM rbh
LuxR family transcriptional regulator {ECO:0000313|EMBL:KGF07134.1}; TaxID=1284708 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XI. Incertae Sedis.;" source="Clostrid rbh
two-component response regulator
NECEvent2014_6_6_Clostridiales_50_23_scaffold_175_16
Peptoniphilus sp. oral taxon 836, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8748..9425)
DNA (678bp) protein (226aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Peptoniphilus sp. oral taxon 836 str. F0141 RepID=D8FJZ4_9FIRM
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:EFK38590.1}; TaxID=768724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" sourc
putative two-component sensor histidine kinase
Displaying 16 items

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