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NECEvent2014_6_6_scaffold_901

Alias: 176_006_scaffold_901

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_6_scaffold_901_1
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(58..711)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FPR1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDG02739.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
NECEvent2014_6_6_scaffold_901_2
Turicibacter sanguinis, Turicibacter, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

874..1527
DNA (654bp) protein (218aa)
Nitroreductase family protein n=2 Tax=Turicibacter RepID=D4W6M2_9FIRM
Nitroreductase family protein {ECO:0000313|EMBL:EFF63414.1}; TaxID=702450 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Turicibacter.;" source="Turicibacter
nitroreductase
NECEvent2014_6_6_scaffold_901_3
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1745..2884)
DNA (1140bp) protein (380aa)
PTS system, lactose/cellobiose IIC component family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VLC8_CLOBI rbh
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] biferme
PTS system, cellobiose-specific IIC component
NECEvent2014_6_6_scaffold_901_4
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2911..3525)
DNA (615bp) protein (205aa)
MgsA AAA+ ATPase family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VSQ5_CLOBI rbh
MgsA AAA+ ATPase family protein {ECO:0000313|EMBL:EQK44518.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium]
Hypothetical protein
NECEvent2014_6_6_scaffold_901_5
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3600..4292
DNA (693bp) protein (231aa)
Helix-turn-helix domain, rpiR family protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0D1M0_CLOSO
SIS domain-containing protein,MurPQ operon repressor,DNA-binding transcriptional repressor RpiR,Predicted phosphosugar isomerases,6-phospho 3-hexuloisomerase,Helix-turn-helix domain, rpiR family {ECO:
transcriptional regulator
NECEvent2014_6_6_scaffold_901_6
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4493..6283)
DNA (1791bp) protein (597aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FAF5_9CLOT
Putative Aspartate--tRNA ligase {ECO:0000313|EMBL:CDG02023.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF433
NECEvent2014_6_6_scaffold_901_7
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6302..7552)
DNA (1251bp) protein (417aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:00
hisS; histidine--tRNA ligase HisS (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FN38_9CLOT
NECEvent2014_6_6_scaffold_901_8
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7564..8994)
DNA (1431bp) protein (477aa)
hemZ; coproporphyrinogen dehydrogenase HemZ (EC:1.3.99.22)
Coproporphyrinogen dehydrogenase HemZ {ECO:0000313|EMBL:AIY82671.1}; EC=1.3.99.22 {ECO:0000313|EMBL:AIY82671.1};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae
Coproporphyrinogen dehydrogenase HemZ n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H2H9_9CLOT rbh
NECEvent2014_6_6_scaffold_901_9
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9003..9620)
DNA (618bp) protein (206aa)
Metallo-beta-lactamase family protein n=2 Tax=Clostridium botulinum B RepID=B2TN02_CLOBB
metallo-beta-lactamase family protein
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:ACD23805.1}; Putative metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:CDH89955.1}; TaxID=935198 species="Bacteria; Firmicutes; Clos
NECEvent2014_6_6_scaffold_901_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9635..10084)
DNA (450bp) protein (150aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160046};; TaxID=632245 species="Bacter
dtd; D-tyrosyl-tRNA(Tyr) deacylase Dtd (EC:3.1.-.-)
D-tyrosyl-tRNA(Tyr) deacylase n=3 Tax=Clostridium butyricum RepID=B1R2Q3_CLOBU
NECEvent2014_6_6_scaffold_901_11
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10097..12283)
DNA (2187bp) protein (729aa)
relA; GTP pyrophosphokinase (EC:2.7.6.5)
Putative RelA/SpoT family protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FAG0_9CLOT
Putative RelA/SpoT family protein {ECO:0000313|EMBL:CDG02028.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4
NECEvent2014_6_6_scaffold_901_12
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12395..12913)
DNA (519bp) protein (173aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000
apt; adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H747_9CLOT
NECEvent2014_6_6_scaffold_901_13
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12984..13841)
DNA (858bp) protein (286aa)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BUA9_9CLOT
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EOR20719.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium
putative single-stranded-DNA-specific exonuclease recJ
NECEvent2014_6_6_scaffold_901_14
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14160..15017)
DNA (858bp) protein (286aa)
Protein-export membrane protein SecF n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9C0D6_9CLOT
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sarta
protein export protein SecD
NECEvent2014_6_6_scaffold_901_15
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15024..16115)
DNA (1092bp) protein (364aa)
Protein translocase subunit SecD n=1 Tax=Clostridium chauvoei JF4335 RepID=S6ELE6_9CLOT
secD; export membrane protein SecD
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii s
NECEvent2014_6_6_scaffold_901_16
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16164..16535)
DNA (372bp) protein (124aa)
membrane protein n=1 Tax=Clostridium botulinum RepID=UPI000378E61E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EES48013.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT
NECEvent2014_6_6_scaffold_901_17
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16586..16855)
DNA (270bp) protein (90aa)
Preprotein translocase, YajC subunit n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QEU5_9CLOT
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EKY26200.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DS
yajC; preprotein translocase, YajC subunit
NECEvent2014_6_6_scaffold_901_18
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16955..18094)
DNA (1140bp) protein (380aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzym
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F0E6_9CLOT
NECEvent2014_6_6_scaffold_901_19
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18107..19132)
DNA (1026bp) protein (342aa)
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000255|HAMAP-Rule:MF_00113}; EC=2.4.99.17 {ECO:0000255|HAMAP-Rule:MF_00113};; Queuosine biosynthesis protein QueA {ECO:0000255|HAMAP-Rule:M
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=2 Tax=Clostridium botulinum E RepID=QUEA_CLOBA
NECEvent2014_6_6_scaffold_901_20
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19147..20181)
DNA (1035bp) protein (345aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.6.4.12)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016, ECO:0000313|EMBL:AIY82379.1};; TaxID=1415775 species="Bacteria; Firmi
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6UBG0_9CLOT
NECEvent2014_6_6_scaffold_901_21
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20193..20804)
DNA (612bp) protein (204aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID
ruvA; Holliday junction DNA helicase RuvA (EC:3.6.4.12)
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FN47_9CLOT
NECEvent2014_6_6_scaffold_901_22
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20968..21549)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MST7_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX43849.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM
NECEvent2014_6_6_scaffold_901_23
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21704..22603
DNA (900bp) protein (300aa)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:EHI98181.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EHI98181.1};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridia
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Clostridium sp. DL-VIII RepID=G7LYC0_9CLOT
short-chain dehydrogenase/reductase SDR
NECEvent2014_6_6_scaffold_901_24
Lysinibacillus manganicus, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22727..23104)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Clostridium ultunense Esp RepID=M1Z9E3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGR78760.1}; TaxID=1384049 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus manganicus DSM 26584.;"
hypothetical protein
NECEvent2014_6_6_scaffold_901_25
unknown

Not on your lists

comp(23169..23435)
DNA (267bp) protein (89aa)

This feature has no annotations

NECEvent2014_6_6_scaffold_901_26
Erysipelothrix rhusiopathiae, Erysipelothrix, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(23714..26407)
DNA (2694bp) protein (898aa)
Alpha-1,3-galactosidase B domain protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=E7FY30_ERYRH
Alpha-1,3-galactosidase B domain protein {ECO:0000313|EMBL:EFY08404.1}; TaxID=525280 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelothrix.;" source=
pectin lyase fold-containing protein
NECEvent2014_6_6_scaffold_901_27
Erysipelothrix rhusiopathiae, Erysipelothrix, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(26361..28115)
DNA (1755bp) protein (585aa)
Pectin lyase fold-containing protein n=1 Tax=Erysipelothrix rhusiopathiae (strain Fujisawa) RepID=F5WR42_ERYRF rbh
pectin lyase fold-containing protein
Pectin lyase fold-containing protein {ECO:0000313|EMBL:BAK31224.1}; TaxID=650150 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelothrix.;" source="Ery
NECEvent2014_6_6_scaffold_901_28
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28303..29178)
DNA (876bp) protein (292aa)
Radical SAM domain protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6G0J0_9CLOT
radical SAM protein
Radical SAM protein {ECO:0000313|EMBL:CDM68900.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
NECEvent2014_6_6_scaffold_901_29
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29434..29763
DNA (330bp) protein (110aa)
Putative uncharacterized protein n=2 Tax=Clostridium botulinum E RepID=B2UXE7_CLOBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIL07746.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
NECEvent2014_6_6_scaffold_901_30
unknown

Not on your lists

comp(29804..29944)
DNA (141bp) protein (47aa)

This feature has no annotations

Displaying items 1-30 of 32 in total

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