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NECEvent2014_6_7_scaffold_36

Alias: 176_007_scaffold_36

Search features with annotation key words

Displaying items 1-30 of 94 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_6_7_scaffold_36_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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47..319
DNA (273bp) protein (91aa)
PRC-barrel domain-containing protein n=9 Tax=Clostridium perfringens RepID=H7CXF5_CLOPF
PRC-barrel domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:BAB81466.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13
NECEvent2014_6_7_scaffold_36_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

381..830
DNA (450bp) protein (150aa)
Transcriptional repressor NrdR n=9 Tax=Clostridium perfringens RepID=NRDR_CLOP1
nrdR; transcriptional regulator NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" s
NECEvent2014_6_7_scaffold_36_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

996..1700
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RQC5_CLOPF rbh
hypothetical protein
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13
NECEvent2014_6_7_scaffold_36_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1714..3429
DNA (1716bp) protein (572aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" so
Sensory box histidine kinase n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RQC4_CLOPF rbh
sensory box histidine kinase
NECEvent2014_6_7_scaffold_36_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3756..5093
DNA (1338bp) protein (446aa)
Uncharacterized protein n=3 Tax=Clostridium perfringens RepID=H7CXF1_CLOPF rbh
Uncharacterized protein {ECO:0000313|EMBL:EDT71359.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1
hypothetical protein
NECEvent2014_6_7_scaffold_36_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5096..6412
DNA (1317bp) protein (439aa)
GTPase Der n=11 Tax=Clostridium perfringens RepID=DER_CLOP1 rbh
engA; GTP-binding protein EngA
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostri
NECEvent2014_6_7_scaffold_36_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6417..7412
DNA (996bp) protein (332aa)
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=8 Tax=Clostridium perfringens RepID=GPDA_CLOP1 rbh
NECEvent2014_6_7_scaffold_36_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7741..9216
DNA (1476bp) protein (492aa)
Stage IV sporulation protein A {ECO:0000256|PIRNR:PIRNR007466}; EC=3.6.1.3 {ECO:0000256|PIRNR:PIRNR007466};; Coat morphogenetic protein SpoIVA {ECO:0000256|PIRNR:PIRNR007466}; TaxID=451756 species="Ba
Stage IV sporulation protein A n=9 Tax=Clostridium perfringens RepID=H7CXE8_CLOPF rbh
spoIVA; stage IV sporulation protein A
NECEvent2014_6_7_scaffold_36_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9567..10550
DNA (984bp) protein (328aa)
L-asparaginase (EC:3.5.1.1)
L-asparaginase {ECO:0000313|EMBL:EDT14044.1}; EC=3.5.1.1 {ECO:0000313|EMBL:EDT14044.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="C
L-asparaginase n=9 Tax=Clostridium perfringens RepID=Q0TPK2_CLOP1 rbh
NECEvent2014_6_7_scaffold_36_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10808..12205
DNA (1398bp) protein (466aa)
Xanthine/uracil permease family protein n=2 Tax=Clostridium perfringens RepID=Q0TPK3_CLOP1 rbh
xanthine/uracil permease
Xanthine/uracil permease family protein {ECO:0000313|EMBL:EDT14024.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfrin
NECEvent2014_6_7_scaffold_36_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12425..13309
DNA (885bp) protein (295aa)
Uncharacterized protein n=9 Tax=Clostridium perfringens RepID=H7CXE5_CLOPF rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT26443.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4
NECEvent2014_6_7_scaffold_36_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13323..13592
DNA (270bp) protein (90aa)
UPF0296 protein CPR_1720 n=11 Tax=Clostridium perfringens RepID=Y1720_CLOPS
hypothetical protein
UPF0296 protein HA1_10556 {ECO:0000256|HAMAP-Rule:MF_01503}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.
NECEvent2014_6_7_scaffold_36_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13585..14232
DNA (648bp) protein (216aa)
gmk; guanylate kinase (EC:2.7.4.8)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_0
Guanylate kinase n=16 Tax=Clostridium perfringens RepID=KGUA_CLOP1 rbh
NECEvent2014_6_7_scaffold_36_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14213..14425
DNA (213bp) protein (71aa)
rpoZ; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-R
DNA-directed RNA polymerase subunit omega n=11 Tax=Clostridium perfringens RepID=RPOZ_CLOP1
NECEvent2014_6_7_scaffold_36_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14431..15618
DNA (1188bp) protein (396aa)
coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase (EC:4.1.1.36 6.3.2.5)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase {ECO:0000313|EMBL:EDT71371.1}; EC=4.1.1.36 {ECO:0000313|EMBL:EDT71371.1};; EC=6.3.2.5 {ECO:0000313|EMBL:EDT71371.1};; Tax
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase n=3 Tax=Clostridium perfringens RepID=Q0TPK8_CLOP1 rbh
NECEvent2014_6_7_scaffold_36_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15657..17852
DNA (2196bp) protein (732aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=451755 species="Bacteria; F
Primosomal protein N n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RQB2_CLOPF rbh
priA; primosome assembly protein PriA
NECEvent2014_6_7_scaffold_36_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17866..18309
DNA (444bp) protein (148aa)
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
Peptide deformylase n=5 Tax=Clostridium perfringens RepID=Q0TPL0_CLOP1
NECEvent2014_6_7_scaffold_36_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18329..19258
DNA (930bp) protein (310aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=883064 species="B
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=3 Tax=Clostridium perfringens RepID=H7CXD8_CLOPF rbh
NECEvent2014_6_7_scaffold_36_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19276..19971
DNA (696bp) protein (232aa)
Uncharacterized protein n=5 Tax=Clostridium perfringens RepID=Q8XJL4_CLOPE rbh
hypothetical protein
Putative neutral zinc metallopeptidase {ECO:0000313|EMBL:EDT14022.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfring
NECEvent2014_6_7_scaffold_36_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19982..21310
DNA (1329bp) protein (443aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clo
Ribosomal RNA small subunit methyltransferase B n=4 Tax=Clostridium perfringens RepID=B1R8F6_CLOPF rbh
RNA-binding Sun protein
NECEvent2014_6_7_scaffold_36_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21342..22385
DNA (1044bp) protein (348aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000255|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000255|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000255|HA
Probable dual-specificity RNA methyltransferase RlmN n=7 Tax=Clostridium perfringens RepID=RLMN_CLOP1 rbh
ribosomal RNA large subunit methyltransferase N
NECEvent2014_6_7_scaffold_36_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22398..23117
DNA (720bp) protein (240aa)
Protein phosphatase family protein n=6 Tax=Clostridium perfringens RepID=H7CXD4_CLOPF rbh
protein phosphatase 2C
Protein phosphatase family protein {ECO:0000313|EMBL:EIA16589.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens
NECEvent2014_6_7_scaffold_36_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23119..25182
DNA (2064bp) protein (688aa)
Serine/threonine-protein kinase PrkC n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RQA5_CLOPF rbh
Serine/threonine protein kinase {ECO:0000313|EMBL:EDS81290.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C s
pobable serine/threonine protein kinase
NECEvent2014_6_7_scaffold_36_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25419..26282
DNA (864bp) protein (288aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostr
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RQA4_CLOPF rbh
ribosome-associated GTPase
NECEvent2014_6_7_scaffold_36_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26282..26935
DNA (654bp) protein (218aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clos
Ribulose-phosphate 3-epimerase n=4 Tax=Clostridium perfringens RepID=Q8XJM0_CLOPE rbh
NECEvent2014_6_7_scaffold_36_26
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26937..27566
DNA (630bp) protein (210aa)
thiamine pyrophosphokinase (EC:2.7.6.2)
Thiamine pyrophosphokinase {ECO:0000313|EMBL:EDT14027.1}; EC=2.7.6.2 {ECO:0000313|EMBL:EDT14027.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
Thiamine pyrophosphokinase n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RQA2_CLOPF rbh
NECEvent2014_6_7_scaffold_36_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(27809..28000)
DNA (192bp) protein (64aa)
50S ribosomal protein L28 n=9 Tax=Clostridium perfringens RepID=RL28_CLOP1
rpmB; 50S ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str
NECEvent2014_6_7_scaffold_36_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28260..28607
DNA (348bp) protein (116aa)
Uncharacterized protein n=11 Tax=Clostridium perfringens RepID=H7CXC8_CLOPF
hypothetical protein
Probable alkaline-shock protein {ECO:0000313|EMBL:BAB81439.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (st
NECEvent2014_6_7_scaffold_36_29
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28621..30267
DNA (1647bp) protein (549aa)
DAK2 domain protein n=4 Tax=Clostridium perfringens RepID=Q0TPM2_CLOP1 rbh
DAK2 domain-containing protein
DAK2 domain protein {ECO:0000313|EMBL:EDT26504.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.
NECEvent2014_6_7_scaffold_36_30
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30420..32492
DNA (2073bp) protein (691aa)
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:EDT71381.1}; EC=3.6.1.- {ECO:0000313|EMBL:EDT71381.1};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostri
recG; ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG n=1 Tax=Clostridium perfringens D str. JGS1721 RepID=B1V479_CLOPF rbh
Displaying items 1-30 of 94 in total

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