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NECEvent2014_8_1_Clostridium_paraputrificum_29_36

NECEvent2014_8_1_Clostridium_30_43
In projects: NECEvent2014_8_1

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

rpS3 100% to Clostridium paraputrificum

Displaying items 1-50 of 233 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_1_scaffold_2782 178_001_scaffold_2782
Species: Clostridium baratii (100%)
2 1698 bp 34.63 158.75 99.82
NECEvent2014_8_1_scaffold_245 178_001_scaffold_245
Genus: Clostridium (92.31%)
13 14769 bp 34.46 132.02 88.95
NECEvent2014_8_1_scaffold_139 178_001_scaffold_139
Genus: Clostridium (100%)
37 21027 bp 33.50 105.84 87.33
NECEvent2014_8_1_scaffold_408 178_001_scaffold_408
Genus: Clostridium (90.91%)
11 9987 bp 32.21 91.21 88.83
NECEvent2014_8_1_scaffold_85 178_001_scaffold_85
Order: Clostridiales (61%)
31 29418 bp 35.96 89.42 88.22
NECEvent2014_8_1_scaffold_1172 178_001_scaffold_1172
Genus: Clostridium (60%)
5 4043 bp 32.18 78.88 71.36
NECEvent2014_8_1_scaffold_288 178_001_scaffold_288
Genus: Clostridium (81.25%)
16 14066 bp 31.57 78.60 91.29
NECEvent2014_8_1_scaffold_1149 178_001_scaffold_1149
Species: Clostridium sulfidigenes (66.67%)
3 4119 bp 32.24 78.51 87.40
NECEvent2014_8_1_scaffold_2073 178_001_scaffold_2073
Species: Clostridium botulinum (100%)
1 2293 bp 32.40 75.95 78.50
NECEvent2014_8_1_scaffold_354 178_001_scaffold_354
Genus: Clostridium (66.67%)
6 11289 bp 31.70 71.42 84.91
NECEvent2014_8_1_scaffold_2571 178_001_scaffold_2571
Species: Clostridium butyricum (50%)
2 1831 bp 27.14 70.13 93.88
NECEvent2014_8_1_scaffold_878 178_001_scaffold_878
Genus: Clostridium (80%)
5 6001 bp 31.69 69.51 79.34
NECEvent2014_8_1_scaffold_88 178_001_scaffold_88
Genus: Clostridium (87.5%)
24 28620 bp 32.13 67.74 89.88
NECEvent2014_8_1_scaffold_706 178_001_scaffold_706
Genus: Clostridium (100%)
5 6568 bp 30.59 65.86 81.35
NECEvent2014_8_1_scaffold_170 178_001_scaffold_170
Genus: Clostridium (72.22%)
18 18621 bp 30.88 63.45 87.66
NECEvent2014_8_1_scaffold_92 178_001_scaffold_92
Genus: Clostridium (92.86%)
28 27764 bp 31.55 61.64 87.22
NECEvent2014_8_1_scaffold_1424 178_001_scaffold_1424
Species: Terrisporobacter othiniensis (50%)
2 3353 bp 31.08 61.02 91.53
NECEvent2014_8_1_scaffold_406 178_001_scaffold_406
Genus: Clostridium (85.71%)
7 10022 bp 31.50 60.98 86.81
NECEvent2014_8_1_scaffold_232 178_001_scaffold_232
Genus: Clostridium (73.33%)
15 15172 bp 30.50 59.73 88.69
NECEvent2014_8_1_scaffold_30 178_001_scaffold_30
Genus: Clostridium (80.85%)
47 56182 bp 31.16 59.57 90.81
NECEvent2014_8_1_scaffold_262 178_001_scaffold_262
Genus: Clostridium (64.29%)
14 13985 bp 30.75 56.93 88.68
NECEvent2014_8_1_scaffold_181 178_001_scaffold_181
Genus: Clostridium (94.12%)
17 17886 bp 30.53 56.92 89.90
NECEvent2014_8_1_scaffold_570 178_001_scaffold_570
Genus: Clostridium (75%)
4 7834 bp 31.02 55.16 92.94
NECEvent2014_8_1_scaffold_14 178_001_scaffold_14
Genus: Clostridium (92.59%)
81 76114 bp 30.50 54.65 91.49
NECEvent2014_8_1_scaffold_192 178_001_scaffold_192
Species: Clostridium baratii (78.57%)
14 17271 bp 31.10 53.94 94.35
NECEvent2014_8_1_scaffold_1452 178_001_scaffold_1452 6 3289 bp 30.19 53.45 86.29
NECEvent2014_8_1_scaffold_224 178_001_scaffold_224
Genus: Clostridium (85%)
20 15469 bp 30.36 53.40 91.45
NECEvent2014_8_1_scaffold_115 178_001_scaffold_115
Genus: Clostridium (100%)
22 24431 bp 30.58 52.95 88.90
NECEvent2014_8_1_scaffold_16 178_001_scaffold_16
Genus: Clostridium (98.57%)
70 72650 bp 30.88 52.64 93.94
NECEvent2014_8_1_scaffold_612 178_001_scaffold_612
Genus: Clostridium (100%)
5 7359 bp 30.22 51.79 90.95
NECEvent2014_8_1_scaffold_2357 178_001_scaffold_2357
Species: Clostridium perfringens (66.67%)
3 1996 bp 36.22 51.78 92.33
NECEvent2014_8_1_scaffold_351 178_001_scaffold_351
Genus: Clostridium (100%)
12 11355 bp 31.05 50.74 93.21
NECEvent2014_8_1_scaffold_1234 178_001_scaffold_1234
Genus: Clostridium (60%)
5 3884 bp 30.69 50.51 68.33
NECEvent2014_8_1_scaffold_82 178_001_scaffold_82
Genus: Clostridium (90.48%)
21 29913 bp 30.23 50.48 89.17
NECEvent2014_8_1_scaffold_630 178_001_scaffold_630
Genus: Clostridium (100%)
6 7250 bp 29.82 50.36 90.17
NECEvent2014_8_1_scaffold_252 178_001_scaffold_252
Genus: Clostridium (50%)
12 14360 bp 30.35 50.31 87.93
NECEvent2014_8_1_scaffold_403 178_001_scaffold_403
Genus: Clostridium (90%)
10 10066 bp 30.82 50.23 86.49
NECEvent2014_8_1_scaffold_108 178_001_scaffold_108
Genus: Clostridium (92%)
25 25303 bp 30.28 49.67 90.29
NECEvent2014_8_1_scaffold_400 178_001_scaffold_400
Genus: Clostridium (66.67%)
9 10113 bp 30.81 49.61 90.95
NECEvent2014_8_1_scaffold_371 178_001_scaffold_371
Genus: Clostridium (70%)
10 10877 bp 30.11 49.34 88.56
NECEvent2014_8_1_scaffold_17 178_001_scaffold_17
Genus: Clostridium (86.57%)
67 72539 bp 30.45 48.96 89.89
NECEvent2014_8_1_scaffold_21 178_001_scaffold_21
Genus: Clostridium (95.31%)
64 66492 bp 30.36 48.61 91.67
NECEvent2014_8_1_scaffold_1023 178_001_scaffold_1023
Genus: Clostridium (66.67%)
6 4549 bp 29.70 47.52 71.64
NECEvent2014_8_1_scaffold_175 178_001_scaffold_175
Genus: Clostridium (76.19%)
21 18169 bp 31.41 47.43 93.04
NECEvent2014_8_1_scaffold_56 178_001_scaffold_56
Genus: Clostridium (76.47%)
34 38987 bp 30.13 46.98 93.23
NECEvent2014_8_1_scaffold_1221 178_001_scaffold_1221
Genus: Clostridium (66.67%)
3 3925 bp 29.40 46.89 91.87
NECEvent2014_8_1_scaffold_183 178_001_scaffold_183
Genus: Clostridium (75%)
20 17871 bp 30.69 46.54 92.13
NECEvent2014_8_1_scaffold_1434 178_001_scaffold_1434
Genus: Clostridium (60%)
5 3328 bp 29.54 46.51 80.32
NECEvent2014_8_1_scaffold_135 178_001_scaffold_135
Genus: Clostridium (61.54%)
13 21313 bp 29.98 46.34 93.52
NECEvent2014_8_1_scaffold_165 178_001_scaffold_165
Order: Clostridiales (66.67%)
12 19055 bp 30.41 46.34 89.79
Displaying items 1-50 of 233 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.