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NECEvent2014_8_1_Clostridium_perfringens-rel_30_12

NECEvent2014_8_1_Clostridium_perfringens_31_10
In projects: NECEvent2014_8_1

Consensus taxonomy: Clostridium perfringens  →  Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Displaying items 351-400 of 731 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_1_scaffold_1679 178_001_scaffold_1679
Species: Clostridium perfringens (50%)
2 2836 bp 30.75 10.47 95.52
NECEvent2014_8_1_scaffold_3157 178_001_scaffold_3157
Species: Clostridium perfringens (100%)
2 1483 bp 29.53 7.08 95.48
NECEvent2014_8_1_scaffold_1071 178_001_scaffold_1071
Species: Clostridium perfringens (100%)
2 4346 bp 31.27 10.22 95.47
NECEvent2014_8_1_scaffold_3790 178_001_scaffold_3790
Species: Clostridium perfringens (100%)
1 1226 bp 31.00 7.10 95.43
NECEvent2014_8_1_scaffold_2984 178_001_scaffold_2984
Species: Clostridium perfringens (100%)
1 1575 bp 31.56 10.48 95.43
NECEvent2014_8_1_scaffold_2814 178_001_scaffold_2814
Species: Clostridium perfringens (100%)
1 1679 bp 30.67 5.18 95.41
NECEvent2014_8_1_scaffold_3053 178_001_scaffold_3053
Species: Clostridium perfringens (100%)
2 1532 bp 26.96 3.52 95.37
NECEvent2014_8_1_scaffold_1664 178_001_scaffold_1664
Species: Clostridium perfringens (100%)
2 2857 bp 30.73 7.25 95.34
NECEvent2014_8_1_scaffold_4507 178_001_scaffold_4507
Species: Clostridium perfringens (100%)
2 1026 bp 31.29 9.65 95.32
NECEvent2014_8_1_scaffold_1754 178_001_scaffold_1754
Species: Clostridium perfringens (100%)
2 2703 bp 35.26 11.21 95.23
NECEvent2014_8_1_scaffold_3662 178_001_scaffold_3662
Species: Clostridium perfringens (100%)
1 1270 bp 31.18 7.32 95.20
NECEvent2014_8_1_scaffold_2403 178_001_scaffold_2403
Species: Clostridium perfringens (100%)
3 1954 bp 29.17 5.68 95.19
NECEvent2014_8_1_scaffold_1587 178_001_scaffold_1587
Species: Clostridium perfringens (100%)
2 2985 bp 33.97 15.18 95.18
NECEvent2014_8_1_scaffold_2897 178_001_scaffold_2897
Species: Clostridium perfringens (100%)
1 1630 bp 30.86 6.26 95.15
NECEvent2014_8_1_scaffold_1631 178_001_scaffold_1631
Species: Clostridium perfringens (100%)
3 2911 bp 29.71 6.18 95.12
NECEvent2014_8_1_scaffold_4513 178_001_scaffold_4513
Species: Clostridium perfringens (100%)
2 1025 bp 29.46 6.73 95.12
NECEvent2014_8_1_scaffold_4046 178_001_scaffold_4046
Species: Clostridium perfringens (100%)
1 1148 bp 31.45 8.49 95.12
NECEvent2014_8_1_scaffold_2479 178_001_scaffold_2479
Species: Clostridium perfringens (100%)
1 1899 bp 32.28 12.32 95.10
NECEvent2014_8_1_scaffold_4214 178_001_scaffold_4214
Species: Clostridium perfringens (100%)
2 1101 bp 32.88 6.95 95.10
NECEvent2014_8_1_scaffold_4165 178_001_scaffold_4165
Species: Clostridium perfringens (100%)
2 1114 bp 29.26 5.12 95.06
NECEvent2014_8_1_scaffold_2030 178_001_scaffold_2030
Species: Clostridium perfringens (100%)
2 2339 bp 32.15 6.67 95.04
NECEvent2014_8_1_scaffold_3677 178_001_scaffold_3677
Species: Clostridium perfringens (100%)
2 1266 bp 30.73 6.16 95.02
NECEvent2014_8_1_scaffold_1319 178_001_scaffold_1319
Species: Clostridium perfringens (100%)
4 3631 bp 30.74 5.45 95.02
NECEvent2014_8_1_scaffold_1504 178_001_scaffold_1504
Species: Clostridium perfringens (100%)
1 3165 bp 32.10 10.62 94.98
NECEvent2014_8_1_scaffold_4333 178_001_scaffold_4333
Species: Clostridium perfringens (100%)
2 1071 bp 29.23 4.48 94.96
NECEvent2014_8_1_scaffold_2462 178_001_scaffold_2462
Species: Clostridium perfringens (100%)
2 1909 bp 28.76 5.74 94.92
NECEvent2014_8_1_scaffold_1491 178_001_scaffold_1491
Species: Clostridium perfringens (100%)
3 3199 bp 31.42 9.71 94.81
NECEvent2014_8_1_scaffold_1663 178_001_scaffold_1663
Species: Clostridium perfringens (100%)
3 2858 bp 28.38 5.88 94.79
NECEvent2014_8_1_scaffold_2945 178_001_scaffold_2945
Species: Clostridium perfringens (100%)
1 1602 bp 31.71 10.30 94.76
NECEvent2014_8_1_scaffold_2626 178_001_scaffold_2626
Species: Clostridium botulinum (66.67%)
3 1792 bp 26.84 9.04 94.75
NECEvent2014_8_1_scaffold_2129 178_001_scaffold_2129
Species: Clostridium perfringens (100%)
2 2227 bp 29.41 6.40 94.70
NECEvent2014_8_1_scaffold_3447 178_001_scaffold_3447
Species: Clostridium perfringens (100%)
2 1356 bp 29.94 6.64 94.69
NECEvent2014_8_1_scaffold_1240 178_001_scaffold_1240
Species: Clostridium perfringens (100%)
2 3868 bp 31.13 18.11 94.62
NECEvent2014_8_1_scaffold_3434 178_001_scaffold_3434
Species: Clostridium perfringens (100%)
1 1361 bp 31.08 6.83 94.56
NECEvent2014_8_1_scaffold_2529 178_001_scaffold_2529
Species: Clostridium perfringens (83.33%)
6 1859 bp 27.27 6.94 94.41
NECEvent2014_8_1_scaffold_3421 178_001_scaffold_3421
Species: Clostridium perfringens (100%)
1 1367 bp 31.97 9.66 94.37
NECEvent2014_8_1_scaffold_4578 178_001_scaffold_4578
Species: Clostridium perfringens (100%)
2 1008 bp 26.19 2.68 94.35
NECEvent2014_8_1_scaffold_4053 178_001_scaffold_4053
Species: Clostridium perfringens (100%)
1 1145 bp 28.91 5.76 94.32
NECEvent2014_8_1_scaffold_1328 178_001_scaffold_1328
Species: Clostridium perfringens (100%)
1 3614 bp 31.63 10.54 94.30
NECEvent2014_8_1_scaffold_3074 178_001_scaffold_3074
Species: Clostridium perfringens (100%)
2 1524 bp 27.03 5.61 94.29
NECEvent2014_8_1_scaffold_1786 178_001_scaffold_1786
Species: Clostridium perfringens (100%)
3 2673 bp 31.58 7.07 94.28
NECEvent2014_8_1_scaffold_2305 178_001_scaffold_2305
Species: Clostridium perfringens (100%)
2 2040 bp 32.06 9.56 94.26
NECEvent2014_8_1_scaffold_2008 178_001_scaffold_2008
Species: Clostridium perfringens (100%)
2 2369 bp 28.66 5.95 94.22
NECEvent2014_8_1_scaffold_1848 178_001_scaffold_1848
Species: Clostridium perfringens (100%)
2 2582 bp 32.49 13.25 94.11
NECEvent2014_8_1_scaffold_4033 178_001_scaffold_4033
Species: Clostridium perfringens (100%)
1 1151 bp 31.54 10.30 94.09
NECEvent2014_8_1_scaffold_3055 178_001_scaffold_3055
Species: Clostridium perfringens (100%)
1 1532 bp 30.35 11.16 93.99
NECEvent2014_8_1_scaffold_2461 178_001_scaffold_2461
Species: Clostridium perfringens (100%)
2 1909 bp 31.12 3.61 93.98
NECEvent2014_8_1_scaffold_1864 178_001_scaffold_1864
Genus: Clostridium (100%)
3 2551 bp 27.44 11.58 93.96
NECEvent2014_8_1_scaffold_1058 178_001_scaffold_1058
Genus: Clostridium (100%)
4 4433 bp 30.61 15.84 93.93
NECEvent2014_8_1_scaffold_2490 178_001_scaffold_2490
Species: Clostridium perfringens (100%)
3 1894 bp 32.10 9.19 93.93
Displaying items 351-400 of 731 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.